Agos010432.1
Basic Information
- Insect
- Aphis gossypii
- Gene Symbol
- -
- Assembly
- GCA_004010815.1
- Location
- NW:105749-109570[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.025 1.9 8.6 0.1 1 21 185 205 185 206 0.79 2 15 7.5 5.7e+02 0.8 0.2 1 11 253 263 253 270 0.75 3 15 0.0025 0.19 11.8 1.5 2 21 306 325 305 326 0.93 4 15 0.00096 0.072 13.1 3.4 1 23 333 355 333 355 0.96 5 15 0.00014 0.011 15.7 5.7 1 23 357 379 357 379 0.97 6 15 0.01 0.78 9.8 0.8 1 23 412 435 412 435 0.93 7 15 0.004 0.3 11.2 3.9 2 23 467 488 466 488 0.92 8 15 0.0002 0.015 15.2 5.7 1 23 494 516 494 516 0.99 9 15 0.00032 0.024 14.6 0.3 1 21 522 542 522 542 0.96 10 15 0.0012 0.09 12.8 4.0 1 23 547 569 547 569 0.98 11 15 8e-07 6e-05 22.8 4.9 1 23 601 623 601 623 0.98 12 15 0.092 6.9 6.9 0.8 2 21 647 666 646 667 0.93 13 15 8.4e-06 0.00064 19.6 2.5 2 23 670 692 669 692 0.96 14 15 0.004 0.3 11.2 2.5 1 23 699 721 699 721 0.97 15 15 0.006 0.45 10.6 0.9 1 23 751 774 751 774 0.95
Sequence Information
- Coding Sequence
- atGTTGAATTCTAATAACAACAACGTCGTTTCTGAAAAATGGCAAGAAATTGTATTAGACGAAATTCAATCTGACATAGAAAAttATTCAGATAATGAATTGCCTCTTTCGTCAATAGTTACTACTAATAACACTAATACTGGAAAATggcaagataatattatattggataaTATTCAATCtaacataaaaaatgACTCTGAAAACGAGTTACATCTTTCATCAATAtccatttttaatgataatcacAAATTTCCAAAACACAAAGAAATCAAGTTGGATGATAATCAATCTGACAatgaaaattGCTCAGATAATGAATTGCCTCTTTCATCAATATCCATGTTTAATGATAACCATAAATTTCCAAAGcatcaaaaaatcaatttagatGATATTTTATCTGACAAcgaaaattgctCAGATTATGAATTACCTCTTTCATCAATAGCAAATGTATTGCTTCCAATTGATAGCTGTAAAGTTCAACAATCTGAATCAATTGATTGCCAATCCAAAAAACTAAGTAAAATAGATACACCAATAAAGAAATATGAGTGTGATATCTgtggaaaaatatttcttaggcGTATTGcgattattgaacattttagaaCTAGTTTATGCTTTCCAGACAGTCCTTTTGATTTTGAACTCAAGAGcccacattataatttatgcgaCAATTCTGATAATCCAAtgtcatttttcaaaaatgtaagtaatttaGAAACTACTAATATGAAAGCTATAACCTACAAATGCAGAATTTgtcaaaatgtaattacaaattacaaattaataaaaaggcAACAAATATTGCAtactaaagataataatttatgtaatatatgttcaatattaaatagtgtTACATGTGGCAATAATCAACATCTTAAAGAAAAGTATACATGGAAATGTAAATCTTGTGGGCagaaatttactaaattatctGTTTTAAAAGCTCACAGGTGTATTTTTCCAaagaataaactatttaactgttttaaatgtcataaatcttataaaaccataaacgctttagaaaaacataaaattattcataaatttaattgcaaTATATGTCATAAACAATTCTTTAAGCAGTCAACTTtaacaaatcataaaaaaatacactgttTAAAAAGTATCGATCAACACAATACTCGTCATAAGTACTTAAATTCTAATGTATTAAAACGCACCAACAACTTCTACAATTCAtctcaaaattatgaatgctCAAGATGTTCAGAAGTATTTCATAAACGTTCGGAAATAATAgctcatatttttgaaaatcatcaAGAAGATTATTCCAAATATAGTTGCGATGAATGTACAAATTTATGTGATTCTTCACGGGactatattttgtgtttaacaAAAAACTGTTGCAAATGTGATGTCTGTCCCCAATCATTCACAACAACTCATAGGCTACAACAGCATTATGGATGGCATCttggaattaataattttaaatgccaGTTCTGTcctaaaacattttcaaaatgttctcTTTACTTATCTCATGAAAGAACGCACACAGGAGAAAAACCATTTAGATGTAATTTTTGTGGTAAATGGTTTCCAGatacatcaaatttaaatatccatTTAAAACCCTACAAGCTTTTTAAATGTAGTATATGCCAAAAATCTTATACTCAGATGTCATCATTATCATTCCATAAAAGAAAACATGCTAAAGAAAAACgtctagaaaaaaatttgagcTATTTTCAACTGACAACTTTAGATATGCGTACAAATCgacaatatactaaaaaaacgtattttaattgtaaagtgTGTAATAAATCATTCTATCATGCAAAGTCATTAAATAGACATCTAAGAACACATCAGAACAATAagaatgttaaaaaatcatcCCTAAACAACAAGAAACCACAagaaaatgaacattttattaaatgtgattTATGCAATGAATTATTTCGTGaccagaatattttaatgactcaTATGTGTAAGTCATCTACAtgcaaatattgttttaaagtcTTTAATAATGTTTCTTCACTCAAAAGACACTACAGATACATGcatcaaaaaaacaatgaacTCTTTGACTgtgatatttgtaaaatatcatttaagtGTTTAACTAGTCTTAATGAACACATAAAAAGGCACActcattatgaaaaaaatccgCCTCTTACATGCAATGTcaacaatgaaataaatactacaaaaCAAGAAATGTACAGGGACGAAGAATATAAATGTGATCTTTGtatgaaaagtttttttagtCAAACACAAATTTTTGCTCATATTCTAGAAACTCATtactaa
- Protein Sequence
- MLNSNNNNVVSEKWQEIVLDEIQSDIENYSDNELPLSSIVTTNNTNTGKWQDNIILDNIQSNIKNDSENELHLSSISIFNDNHKFPKHKEIKLDDNQSDNENCSDNELPLSSISMFNDNHKFPKHQKINLDDILSDNENCSDYELPLSSIANVLLPIDSCKVQQSESIDCQSKKLSKIDTPIKKYECDICGKIFLRRIAIIEHFRTSLCFPDSPFDFELKSPHYNLCDNSDNPMSFFKNVSNLETTNMKAITYKCRICQNVITNYKLIKRQQILHTKDNNLCNICSILNSVTCGNNQHLKEKYTWKCKSCGQKFTKLSVLKAHRCIFPKNKLFNCFKCHKSYKTINALEKHKIIHKFNCNICHKQFFKQSTLTNHKKIHCLKSIDQHNTRHKYLNSNVLKRTNNFYNSSQNYECSRCSEVFHKRSEIIAHIFENHQEDYSKYSCDECTNLCDSSRDYILCLTKNCCKCDVCPQSFTTTHRLQQHYGWHLGINNFKCQFCPKTFSKCSLYLSHERTHTGEKPFRCNFCGKWFPDTSNLNIHLKPYKLFKCSICQKSYTQMSSLSFHKRKHAKEKRLEKNLSYFQLTTLDMRTNRQYTKKTYFNCKVCNKSFYHAKSLNRHLRTHQNNKNVKKSSLNNKKPQENEHFIKCDLCNELFRDQNILMTHMCKSSTCKYCFKVFNNVSSLKRHYRYMHQKNNELFDCDICKISFKCLTSLNEHIKRHTHYEKNPPLTCNVNNEINTTKQEMYRDEEYKCDLCMKSFFSQTQIFAHILETHY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00135629;
- 90% Identity
- iTF_00135629;
- 80% Identity
- -