Basic Information

Insect: Aphis gossypii
Gene Symbol: -
Assembly: GCA_004010815.1
Location: NW:131404-138203[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.2e-05 0.0017 18.2 0.6 1 23 189 211 189 211 0.97

2 9 0.0034 0.26 11.3 5.8 1 23 222 244 222 244 0.94

3 9 2e-06 0.00015 21.5 0.8 2 23 337 359 337 359 0.95

4 9 0.00047 0.036 14.1 4.3 2 23 472 493 471 493 0.97

5 9 3.2e-05 0.0024 17.7 2.5 1 23 499 521 499 521 0.96

6 9 1.8e-06 0.00013 21.7 0.1 1 23 527 550 527 550 0.96

7 9 2.8e-07 2.1e-05 24.2 0.8 1 23 556 578 556 578 0.99

8 9 2.8e-06 0.00021 21.1 2.2 1 23 584 606 584 606 0.98

9 9 2.1e-06 0.00016 21.5 0.6 1 23 612 634 612 634 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.2e-05	0.0017	18.2	0.6	1	23	189	211	189	211	0.97
2	9	0.0034	0.26	11.3	5.8	1	23	222	244	222	244	0.94
3	9	2e-06	0.00015	21.5	0.8	2	23	337	359	337	359	0.95
4	9	0.00047	0.036	14.1	4.3	2	23	472	493	471	493	0.97
5	9	3.2e-05	0.0024	17.7	2.5	1	23	499	521	499	521	0.96
6	9	1.8e-06	0.00013	21.7	0.1	1	23	527	550	527	550	0.96
7	9	2.8e-07	2.1e-05	24.2	0.8	1	23	556	578	556	578	0.99
8	9	2.8e-06	0.00021	21.1	2.2	1	23	584	606	584	606	0.98
9	9	2.1e-06	0.00016	21.5	0.6	1	23	612	634	612	634	0.97

Sequence Information

Coding Sequence: ATGGACAATGATATATTGGATGAGAGATCAAGAGAATTTTTAGAAACTGCAGATCAATATATTACTGAACATGGTCATCAACATGTAtctgaagaaaataataaacaacttgTTAGTAACCAACATAATTTACCAGAAGAATTCCGTATCGatgAGAATGGAGAATTATCTCATCACACAACTGGATATTATGAtgcaaatgatatattatctgGTGATGGATCTACAGCTCTCACTGAAGATGACCACCGATTAGCCAGTGAACTAGCTGCTGAGCTTGCTCAACAAAACAAATCTCTTGGTGATGGTAGCCATCATGACACCCATCTTATGACCAGTTATCTATATAGTGCTGACTTTGATTTAAACACGAATAATAAACATTCATCACAAACttcaaatcatataaataatcaacaaaTTATTAGTccagaaaatttaatagaagtTGAAACTTCAGAGTCTGATTACCATGcggaaatacaaaataatttaccacaTAAAAAACGTTTTCGTAAAAGAGAATCTGCCCCGGCTCCAATGAGAAGTATTCATTCAAAATGTTACAAATGTAAACAGTGTGGTGAACAGTTTAATTCTCAATCTGCAGTTactGCACATAAAACAGTACATGCTCCTAAAAAAGTTAGTGGTCGAATGCCATTCTTATGTGAGATCtgtgataaacattttacacatcaaataaagttttttgaaCATCTAAAATTTCATTATGAGCCACAACAAAGTAAAGTAATTGTAGTCACTACTGACTCTGGTACTTCACCACATCatgtaaattatcaaaatcataatattcaagAATCAAcagataataatgaaaatcaatatattgaaGAAACTATTGAAGACCAACCAGAACTTCATGATCTTCCTCCACTTCAAAGTTATAGAttaaCAGAAGAAGAGAGCATGGAGGACGATAAACATTGCATATTTTCATCTGATGGATCTATATTAGCTGCACAACTCCAGCAACCATTTCCTTCATGTCACATATGCGGTAGAAGTTTTCGACGTTTAAAAGCACTAGAAATGCATATGGCTTCTGTACATCCACAACCGGCAACTGTTGTTACTGTTAAGCAGGACTGTTTAGAAGAATTTTCTGATCCAGAAGATTTAATGGAAGGCATTCGCCATATGGTACCTGGTGTAGCTGATACCGAATCAGAAACTGATGAAAAGCAGCCAATACAAGatcaaatttGGGAGTACAATGGTGAAAGTATTACAAATCATGAAGATACCATGATTAAAccaaaagaagaaaataattgtttgttgaATGGAAATGGTGATAATGGTGAAAATAGTCGAGCGGAACATACTTGGGAAGACGATACAGATGAATTGgaacaaataatgaaaaaaaatatttcaaagaatCTTGTATGCACTCAGTGTAAAAGAAAGTTCAATCATCGTAATTCTCTACTATATCATTTAAGATCACATTCTGGTAAACGACCACATAGCTGTAAACTATGTCCTAAGAGTTTCTTCTCCAGCAGTGctcttaaagtacataatcGGTTGCACACTGGAGATAAGCCATTCGAATGTGAGTGGTGTGGACGAAATTTTCGACAGTGGGGTGACCTCAAGTATCATATTGCTTCATTGCACTCTGAATCTAAACAATTTCAATGTGAATTTTGTGGTAAAGACTTTGCTCGTAAATACTCATTGATTGTCCATCGTCGAATACATACTGGagaaaaaaactatgtatgtgaattttgtaaaaaaacttttcgAGCATCATCGTATTTACAAAATCATCGTCGTATTCACAcaggtgaAAAACCATATAAGTGTGAAACTTGTGGTAAAGCATTCAGAGTACGTTCAGACATGCGTCGACATACTGTTGTACATAGGAAAGATGTTGTAAATTCTGttcaaattaatagttatgcaGGTCAAGTGAGTGGGATTGTCACATCTTCAGAAATGAGTATTCATCTAACTAAATTGGAAGTGAATAAAGATAAGCTAACAACGGAATCTGATGTAGATGTTAAATTCCATGAAAATTTTTCCCATGattcaaatcaaatattaactgCAGATGAAGTTAGTACACCTCTCAATCTCAATTTACGAGCTCAAGATAATGGTGACAATGATGAATCTACTAATTTTGAACAGTTTAATGGGCGTCAAGAAATAATTGATCGGGAAACAAATACTTTATATGTTTGGATTCCATCCAATACAGAGCAATTATTACAAAGTGAATGA
Protein Sequence: MDNDILDERSREFLETADQYITEHGHQHVSEENNKQLVSNQHNLPEEFRIDENGELSHHTTGYYDANDILSGDGSTALTEDDHRLASELAAELAQQNKSLGDGSHHDTHLMTSYLYSADFDLNTNNKHSSQTSNHINNQQIISPENLIEVETSESDYHAEIQNNLPHKKRFRKRESAPAPMRSIHSKCYKCKQCGEQFNSQSAVTAHKTVHAPKKVSGRMPFLCEICDKHFTHQIKFFEHLKFHYEPQQSKVIVVTTDSGTSPHHVNYQNHNIQESTDNNENQYIEETIEDQPELHDLPPLQSYRLTEEESMEDDKHCIFSSDGSILAAQLQQPFPSCHICGRSFRRLKALEMHMASVHPQPATVVTVKQDCLEEFSDPEDLMEGIRHMVPGVADTESETDEKQPIQDQIWEYNGESITNHEDTMIKPKEENNCLLNGNGDNGENSRAEHTWEDDTDELEQIMKKNISKNLVCTQCKRKFNHRNSLLYHLRSHSGKRPHSCKLCPKSFFSSSALKVHNRLHTGDKPFECEWCGRNFRQWGDLKYHIASLHSESKQFQCEFCGKDFARKYSLIVHRRIHTGEKNYVCEFCKKTFRASSYLQNHRRIHTGEKPYKCETCGKAFRVRSDMRRHTVVHRKDVVNSVQINSYAGQVSGIVTSSEMSIHLTKLEVNKDKLTTESDVDVKFHENFSHDSNQILTADEVSTPLNLNLRAQDNGDNDESTNFEQFNGRQEIIDRETNTLYVWIPSNTEQLLQSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00019610;
90% Identity: iTF_00463545;
80% Identity: -