Basic Information

Insect: Aphis gossypii
Gene Symbol: su(Hw)
Assembly: GCA_004010815.1
Location: NW:1848800-1854380[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 3.9e-05 0.0029 17.5 1.3 1 23 94 116 94 116 0.95

2 13 8.3e-05 0.0063 16.4 0.6 1 23 155 178 155 178 0.97

3 13 0.00074 0.055 13.4 2.1 2 23 185 206 184 206 0.95

4 13 3.2e-05 0.0024 17.7 1.3 1 19 213 231 213 234 0.95

5 13 2.1e-08 1.5e-06 27.8 0.3 1 23 245 267 245 267 0.97

6 13 6.1e-06 0.00046 20.0 0.4 1 23 277 299 277 299 0.98

7 13 1.2e-06 9.1e-05 22.2 0.5 1 23 305 327 305 327 0.99

8 13 8.1e-05 0.0061 16.5 0.8 1 23 333 355 333 355 0.99

9 13 4.9e-05 0.0037 17.1 3.6 1 23 361 383 361 383 0.95

10 13 4.4e-07 3.3e-05 23.6 1.6 1 23 389 412 389 412 0.97

11 13 0.016 1.2 9.2 0.8 1 23 418 440 418 440 0.97

12 13 1.7e-06 0.00013 21.7 0.7 1 23 446 468 446 468 0.96

13 13 8.6e-07 6.5e-05 22.7 1.3 3 23 476 497 475 497 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	3.9e-05	0.0029	17.5	1.3	1	23	94	116	94	116	0.95
2	13	8.3e-05	0.0063	16.4	0.6	1	23	155	178	155	178	0.97
3	13	0.00074	0.055	13.4	2.1	2	23	185	206	184	206	0.95
4	13	3.2e-05	0.0024	17.7	1.3	1	19	213	231	213	234	0.95
5	13	2.1e-08	1.5e-06	27.8	0.3	1	23	245	267	245	267	0.97
6	13	6.1e-06	0.00046	20.0	0.4	1	23	277	299	277	299	0.98
7	13	1.2e-06	9.1e-05	22.2	0.5	1	23	305	327	305	327	0.99
8	13	8.1e-05	0.0061	16.5	0.8	1	23	333	355	333	355	0.99
9	13	4.9e-05	0.0037	17.1	3.6	1	23	361	383	361	383	0.95
10	13	4.4e-07	3.3e-05	23.6	1.6	1	23	389	412	389	412	0.97
11	13	0.016	1.2	9.2	0.8	1	23	418	440	418	440	0.97
12	13	1.7e-06	0.00013	21.7	0.7	1	23	446	468	446	468	0.96
13	13	8.6e-07	6.5e-05	22.7	1.3	3	23	476	497	475	497	0.97

Sequence Information

Coding Sequence: ATGGAAACAGCTACACCAAGAAAGCGTGGTCGTCCACGAACAGTTAAAGTGGAAAAACGTAGCCCAGAACCTGAAGATTTAGAagcaatattacaaaatataaatgaagacGATATTGAGGAATATGATTACATTCCAAATGGTGTAGCTGATTATgaagttatcaaaaataaaaaaaatattaacaataatgaagATGTGTATGACTTTGATGTAGAAAAGGAAGATGGCCCTGGCATAAtaaAAGCAGAAATAGTTCCTGAACCTGAACCACTGGAACATGCTTGTGATATATGTCCACGAACATTCAAAACCCTTCCCGGTTTAAAAAGACATAAAACATCACATGATCGCAAACCTCAAGAAACTACCACTGttgtaaATGACGATTCAATGAAAAAAGAAATGAATAGTTGTGACTGTTGTGGTGAAGACTTAGCTACTGCTCATACGattgGTGATTTTGAATGTTATGATTGtggaaacttttttaaattaaaagctaATATGGAGCGCCATCAGTTAATGGTACATTGTTATGATGATGTTTTAAACTGTCCCACCTGTGACTTCAGTTGTACTGACAAAGAAACATTATCTCAGCATTTGTATTCTCATGCTGgaACTTTAAAACCGTATTCATGTCCCGTTTGCTTTACATCATTTAGTAGTAAATATCATCTTGTACGCCATAATATGCAAACTGGTTGCGATGGTTCTGAAAAACCCAAATTTCCATgtcaagTTTGCGGAAAAGTTTTCAACAGAAAAGATAATTTAAGAGAACATTTACGTGCTCATGCTGGCCAAACTAAAAAGAAGCGTACTTATAATTgtgaatattgtaataaagaaTTTGTGGGGTCTGCATTATTGACAGTTCATAGAAGAAGTCATTtgggtTACAGACCATATCAATGTGATTTATGTCCTAAACGTTTTCCATCCAGTGGAGCCATGAAAAAACATCGTAGAATTCATACTGGTGAACGTCCTTATGAATGTCAACaatgtTTTGCTAAATTTGCGGCTAAAGAAACTTTAAACCGTCATATCAAAACACATACCGCTCTTAAACCACACTCATGTGAATTCTGTGGAAAAACCTTCATACAAATTTCACAATTGCGTGCCCATTTATTCCATCACacaggtgAAAATGGTTTTACATGTGAAATATGTGGAAAATCCTTTAATCGTCGTTCTCGATTAACTTTGCATACTAGATATGTACATGAAGGAGCAGAACCATTTATGTGTACTGTGTGTAACAAAGCTTTACTGCGAAAGGAAGATGTACAGAGACATCATATTGTTCATTCTGGAGTCAAAGCTCATGCGTGTCCTATTTGTGAAAAACGGTTTGCAATGAAGTCTTCATTAAAAATTCACTTATTAACACATACAAAAGAACCTCCACGAGCTTGTGATGAATGTGGCCGTGCATTTATTCGTCAAGATTGTTTGTTACGTCACATGCGCTCTAAACATAGAGATATGTTGGCTGAGATAATGGCTGACgctgaaaagaaaaaactggAAGCTCAGCTATTGGGAGTAGTGAAAAAAGATAAAGATAACGAAAACGTTTCTGGTGAAATTGACAATAGAGAGGACGATGATGAAAGTATTGATGAATTAGAAGATAATGGGTCAATCACAAGTGAAGAATCCAATCAAAACAACACTTTGGCAGAATCACTAATGGAATTGCTAACCGTTTTAGTTGATGAGAGTACTCTTAAAGAATTTGGTTGGCCAGGAACAACAGTTGATCATTTAATTGAATCTGTGATAaagaGATGTGGTCACACTCCTGTAGCAGCTGAAGATGCTTCTTATATGGCCAGACTTCGAGagaattcaaaacaattattctcAATTATTATCGATGATTCAGCTATTCAAACACTACTCAGTAACCAAACAATTGAAGAAGTTATTGAACATGTGTTAAAATTAGCTAAAGCatag
Protein Sequence: METATPRKRGRPRTVKVEKRSPEPEDLEAILQNINEDDIEEYDYIPNGVADYEVIKNKKNINNNEDVYDFDVEKEDGPGIIKAEIVPEPEPLEHACDICPRTFKTLPGLKRHKTSHDRKPQETTTVVNDDSMKKEMNSCDCCGEDLATAHTIGDFECYDCGNFFKLKANMERHQLMVHCYDDVLNCPTCDFSCTDKETLSQHLYSHAGTLKPYSCPVCFTSFSSKYHLVRHNMQTGCDGSEKPKFPCQVCGKVFNRKDNLREHLRAHAGQTKKKRTYNCEYCNKEFVGSALLTVHRRSHLGYRPYQCDLCPKRFPSSGAMKKHRRIHTGERPYECQQCFAKFAAKETLNRHIKTHTALKPHSCEFCGKTFIQISQLRAHLFHHTGENGFTCEICGKSFNRRSRLTLHTRYVHEGAEPFMCTVCNKALLRKEDVQRHHIVHSGVKAHACPICEKRFAMKSSLKIHLLTHTKEPPRACDECGRAFIRQDCLLRHMRSKHRDMLAEIMADAEKKKLEAQLLGVVKKDKDNENVSGEIDNREDDDESIDELEDNGSITSEESNQNNTLAESLMELLTVLVDESTLKEFGWPGTTVDHLIESVIKRCGHTPVAAEDASYMARLRENSKQLFSIIIDDSAIQTLLSNQTIEEVIEHVLKLAKA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01167898;
90% Identity: iTF_01167898;
80% Identity: -