Basic Information

Insect: Aphis gossypii
Gene Symbol: -
Assembly: GCA_004010815.1
Location: NW:163215-191058[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.9e-06 0.00014 21.6 1.4 5 23 1 19 1 19 0.97

2 10 4.5e-10 3.4e-08 33.0 1.4 1 23 25 47 25 47 0.99

3 10 3.5e-09 2.7e-07 30.2 3.9 1 23 53 75 53 75 0.99

4 10 7.7e-08 5.8e-06 26.0 3.6 1 23 81 103 81 103 0.98

5 10 0.00042 0.032 14.2 1.5 5 23 113 131 112 131 0.96

6 10 2.4e-06 0.00018 21.3 0.5 1 17 137 153 137 154 0.95

7 10 5.1e-06 0.00038 20.3 1.4 1 21 165 185 165 186 0.95

8 10 1.1e-08 8.7e-07 28.6 2.5 1 23 193 215 193 215 0.99

9 10 1.6e-09 1.2e-07 31.3 1.0 1 23 221 243 221 243 0.99

10 10 3.1e-05 0.0024 17.8 0.3 1 16 249 264 249 266 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.9e-06	0.00014	21.6	1.4	5	23	1	19	1	19	0.97
2	10	4.5e-10	3.4e-08	33.0	1.4	1	23	25	47	25	47	0.99
3	10	3.5e-09	2.7e-07	30.2	3.9	1	23	53	75	53	75	0.99
4	10	7.7e-08	5.8e-06	26.0	3.6	1	23	81	103	81	103	0.98
5	10	0.00042	0.032	14.2	1.5	5	23	113	131	112	131	0.96
6	10	2.4e-06	0.00018	21.3	0.5	1	17	137	153	137	154	0.95
7	10	5.1e-06	0.00038	20.3	1.4	1	21	165	185	165	186	0.95
8	10	1.1e-08	8.7e-07	28.6	2.5	1	23	193	215	193	215	0.99
9	10	1.6e-09	1.2e-07	31.3	1.0	1	23	221	243	221	243	0.99
10	10	3.1e-05	0.0024	17.8	0.3	1	16	249	264	249	266	0.91

Sequence Information

Coding Sequence: ATGTGTGATAAATCGTTCATTCAGAATAGTAATTTAACAGCACACCATCGCACGCACATGGCAGAAAGACCATACTCGTGTAACGTTTGTGGCCAATCATTTTCTCGAAACAGTAATCTAAAAGTTCATCAACGAACTCACACGAAAGAAAAGCCATACCAATGTAAAGTTTGTGGCAAATCGTTCACTCGGAGTAGTCATCTAACAGTACATAATCGAACGCACACGGGAGAAAAACCTTTCTCATGTAACGTTTGTGGCAAATCGTTCACTCAGAGAAATCATCTAACAGTACACAATCGAACGCACACGGGAGAAAAACCTTTCTCATATAACGTTTGTGACAAATCGTTTGCTCACAATTGTGTCCTGAAAGTTCATCAACAAACTCACACGGAAGAAAATCCATACCAGTGTAACGTGTGTGATAAATCGTTCTCTCAAAGGAGTCATCTAACAGCATACCATCGAACACCCACGGAAGAGAAGACATACCAGTGTGACGTTTGTGACAACTCGTTCACTGAGAAAAGTAATCTAACAACACACCATCAAAGGTACACGGAAGAGAAGCCATACCAGTGTGAAGTTTGTGGCAAATCGTTTACTCAAAACCATACACTGATAGATCACCGTCGAACGCACACGGGAGAAAAACTATACCAGTGTGACGTTTGTGGTACATCGTTTTCTCAAAGCAATAACCTGAAAGTTCATCAACGAACTCACACGGAAGAAAATCCATATCAGTGTAACGTTTGTGGAAAATCGTTTTCTCAAAGCAATAAACTGATAGATAGAACTGATAGATCATCAGCGAACGCTCACGGGAGAGAAGTCATAAGAGTATAA
Protein Sequence: MCDKSFIQNSNLTAHHRTHMAERPYSCNVCGQSFSRNSNLKVHQRTHTKEKPYQCKVCGKSFTRSSHLTVHNRTHTGEKPFSCNVCGKSFTQRNHLTVHNRTHTGEKPFSYNVCDKSFAHNCVLKVHQQTHTEENPYQCNVCDKSFSQRSHLTAYHRTPTEEKTYQCDVCDNSFTEKSNLTTHHQRYTEEKPYQCEVCGKSFTQNHTLIDHRRTHTGEKLYQCDVCGTSFSQSNNLKVHQRTHTEENPYQCNVCGKSFSQSNKLIDRTDRSSANAHGREVIRV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -