Basic Information

Insect: Aphis gossypii
Gene Symbol: -
Assembly: GCA_004010815.1
Location: NW:33330-42470[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 6.3e-05 0.0047 16.8 1.7 1 23 145 168 145 168 0.96

2 18 8.6e-09 6.5e-07 29.0 1.1 1 23 192 214 192 214 0.98

3 18 0.00013 0.0094 15.9 4.3 1 23 220 242 220 242 0.98

4 18 0.0011 0.082 12.9 2.3 1 20 248 267 248 270 0.93

5 18 0.00026 0.019 14.9 8.7 1 23 276 299 276 299 0.97

6 18 9.9e-07 7.5e-05 22.5 5.9 1 23 305 327 305 327 0.98

7 18 5.3e-07 4e-05 23.3 4.5 2 23 334 355 334 355 0.97

8 18 1.1e-06 8.7e-05 22.3 1.3 1 23 361 383 361 383 0.98

9 18 2.2e-05 0.0016 18.3 0.3 1 23 389 411 389 411 0.98

10 18 0.00038 0.028 14.4 2.7 1 23 417 439 417 439 0.98

11 18 0.002 0.15 12.1 3.8 1 23 445 467 445 467 0.99

12 18 5.8e-05 0.0043 16.9 1.3 1 23 473 495 473 495 0.99

13 18 6.6e-09 5e-07 29.3 2.3 1 23 501 523 501 523 0.99

14 18 2.2e-07 1.7e-05 24.5 0.6 1 23 529 551 529 551 0.99

15 18 0.024 1.8 8.7 6.6 1 23 558 580 558 580 0.98

16 18 0.0035 0.27 11.3 0.6 1 23 586 608 586 608 0.97

17 18 0.0044 0.33 11.0 0.7 2 23 616 638 615 638 0.95

18 18 0.0098 0.74 9.9 4.0 1 23 643 665 643 665 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	6.3e-05	0.0047	16.8	1.7	1	23	145	168	145	168	0.96
2	18	8.6e-09	6.5e-07	29.0	1.1	1	23	192	214	192	214	0.98
3	18	0.00013	0.0094	15.9	4.3	1	23	220	242	220	242	0.98
4	18	0.0011	0.082	12.9	2.3	1	20	248	267	248	270	0.93
5	18	0.00026	0.019	14.9	8.7	1	23	276	299	276	299	0.97
6	18	9.9e-07	7.5e-05	22.5	5.9	1	23	305	327	305	327	0.98
7	18	5.3e-07	4e-05	23.3	4.5	2	23	334	355	334	355	0.97
8	18	1.1e-06	8.7e-05	22.3	1.3	1	23	361	383	361	383	0.98
9	18	2.2e-05	0.0016	18.3	0.3	1	23	389	411	389	411	0.98
10	18	0.00038	0.028	14.4	2.7	1	23	417	439	417	439	0.98
11	18	0.002	0.15	12.1	3.8	1	23	445	467	445	467	0.99
12	18	5.8e-05	0.0043	16.9	1.3	1	23	473	495	473	495	0.99
13	18	6.6e-09	5e-07	29.3	2.3	1	23	501	523	501	523	0.99
14	18	2.2e-07	1.7e-05	24.5	0.6	1	23	529	551	529	551	0.99
15	18	0.024	1.8	8.7	6.6	1	23	558	580	558	580	0.98
16	18	0.0035	0.27	11.3	0.6	1	23	586	608	586	608	0.97
17	18	0.0044	0.33	11.0	0.7	2	23	616	638	615	638	0.95
18	18	0.0098	0.74	9.9	4.0	1	23	643	665	643	665	0.98

Sequence Information

Coding Sequence: ATGgaacatttaaattctaaaaaaaaaaatattcctaaattcgataaaatattaagagtaTCACTTGAAAGATGTGATGatctattgaaatattataaccaacaaaaaatcaataaaaaaattgttcaaaaagaCTCGGATATCACTATTGATGAAGACAATGCTCTccaaaaattcaaacaagaaaacaataatgttacGACTAATCTTATTCCTCAAATAGaacaacacaatatttatgCAAATAATGAGCAAGGAGTTATTCTCTCAAAttctTTCAATTCTAAAGAAAACAATGACTCCGCTATCTGTAATGATGTAAAGTATGAAGTTGACTATATTGATGATATGGTATATTGTAGCACTGTTGAAATTGAGCCTGTAAGTTcacagttaatattatataatagcaaGTCTAAAGAGAACAAATCTTACTATTGTTCTCACTGTAAATCCACATTTTCAACTAttgaagatttaaataaacaccAGGAAATACCTCAtaactttcaaatattttctaaacaatTATACGTGAAAAGTCATAATAAAACACATGACCAGAAAGAAACTTTTAACTGTGATTATTGCAATAAGGTTTTTAgtgttaaatcaaatttaacggTGCATATAAGGACGCATACCGGTACAAAACCATTTATATGTGATCTATGTCATAGAGCTTTTgcccaaaaacaaaatttgatgTGTCATATGAGAACACATACTGGATATAAACCTTATTCGTGTCCCATttgtaaaatgaaattttctcATACGTCATTATTAGAGTACCATAAATGGAAACACACTGGtattaaaccatttaaatgTGAAATTTGTGATAGACATTTTTCTCGAAAATCATGTTTAGTTTATCACCAAAAACACTCCCATACAGGTGAAAAAGTGTTTGAATGTCATCATTGTGGAAAAACTTTTTATCGAAAACCTTTTTTGAAGAATCATATGCAAGTCCACAATACCTTACAATTAGAAGAATGCCATATATGTGATAAAAAGTATTCTCACAAATCAAGTTTAAATAGACATATGTTGATCCACTCTggtgaaaaaatgtttgaatgtgCAATGTGTAAAAAAGCCTTTTATCGTAAATTCAATTTACGTGCTCATTTAAAAGTTCATATGACAAAAAGACCTTATGAATGCAATCTTTGCAAATCAACATTCCCTACAGCATCAGAACTAGAAATTCATACAAAATCTCACACTGTTGATCGACCATTTCATTGCCAGCTTTGCGACTCGAGTTTTACATTAGAATCACTTTTTACAATTCATATGAGATCTCATACTGGAGATAGACCATATCAGTGCCCTCATTGTTTAGTGACATATGATCAAAAGAAAAGTTATTCTTACCACTTAAAAACTCATAGAGATCATAAATTGTACAAATGTGATTTGTGTAAagcaacattttttcaaaaaaataaattaattgatcatATCAGATTACATACTGGTGCAAAACCTTTTAAATGCCCAGTTTGTGATAAGAGATTCAcacaaaaagattttttacaaTCACATATGAGAACTCAcaatattgaagaaaaatataaatgtgataTATGTGGAATTTATCTtactcaaaaatcaaatttgattaaacacattaaaacaCATCCCTcattcaaaacaaattataagtgtaaattatgtaaagcAAAATTTGTGCATAAATCCTCTTATGTATGCCACATGAAAATTCATtctgaaaaaattgtttataaatgtagtGTTTGTGGTATttcatttctaataaaaaagaacATGCTAAAGCATGAAAAGatacataaaattgaaaagGCACTACTGAAATGTAATGTCTGTAACCAATCTTTTCCTACAAAACTAGCACGTGTAAATCATGAAAGAAAAAATCACACAGATGAAgtatttcaatgttttatttgttataaattgttttatcaaaaaatacaaataactcaTCATATCAAATTGCATATGAAGAATATGTCATCTGAATGTCTACATTGTAAAAAACCATTGCTAAACAAACCTATTTCAGTGAAGGAATTAAGAGCCATAActggaagtaaaaaaaatgtatgtgatTTGTGTTTTATCATCTTCTAA
Protein Sequence: MEHLNSKKKNIPKFDKILRVSLERCDDLLKYYNQQKINKKIVQKDSDITIDEDNALQKFKQENNNVTTNLIPQIEQHNIYANNEQGVILSNSFNSKENNDSAICNDVKYEVDYIDDMVYCSTVEIEPVSSQLILYNSKSKENKSYYCSHCKSTFSTIEDLNKHQEIPHNFQIFSKQLYVKSHNKTHDQKETFNCDYCNKVFSVKSNLTVHIRTHTGTKPFICDLCHRAFAQKQNLMCHMRTHTGYKPYSCPICKMKFSHTSLLEYHKWKHTGIKPFKCEICDRHFSRKSCLVYHQKHSHTGEKVFECHHCGKTFYRKPFLKNHMQVHNTLQLEECHICDKKYSHKSSLNRHMLIHSGEKMFECAMCKKAFYRKFNLRAHLKVHMTKRPYECNLCKSTFPTASELEIHTKSHTVDRPFHCQLCDSSFTLESLFTIHMRSHTGDRPYQCPHCLVTYDQKKSYSYHLKTHRDHKLYKCDLCKATFFQKNKLIDHIRLHTGAKPFKCPVCDKRFTQKDFLQSHMRTHNIEEKYKCDICGIYLTQKSNLIKHIKTHPSFKTNYKCKLCKAKFVHKSSYVCHMKIHSEKIVYKCSVCGISFLIKKNMLKHEKIHKIEKALLKCNVCNQSFPTKLARVNHERKNHTDEVFQCFICYKLFYQKIQITHHIKLHMKNMSSECLHCKKPLLNKPISVKELRAITGSKKNVCDLCFIIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00135591;
90% Identity: iTF_00135591;
80% Identity: -