Agos007223.1
Basic Information
- Insect
- Aphis gossypii
- Gene Symbol
- -
- Assembly
- GCA_004010815.1
- Location
- NW:104629-109826[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00021 0.016 15.2 4.8 2 23 84 105 83 105 0.98 2 15 1.8e-06 0.00013 21.7 1.5 1 23 111 133 111 133 0.95 3 15 1.7e-08 1.3e-06 28.0 2.1 1 23 139 161 139 161 0.98 4 15 1.8e-07 1.4e-05 24.8 2.4 1 23 167 189 167 189 0.98 5 15 1.3e-06 0.0001 22.1 0.8 1 23 195 217 195 217 0.98 6 15 0.09 6.8 6.9 2.0 1 23 223 246 223 246 0.91 7 15 5.2e-05 0.0039 17.1 4.4 1 23 392 414 392 414 0.98 8 15 1.9e-07 1.4e-05 24.8 0.7 1 23 420 442 420 442 0.96 9 15 1.7e-06 0.00013 21.7 1.8 1 23 448 470 448 470 0.96 10 15 5.2e-07 3.9e-05 23.4 1.8 1 23 476 498 476 498 0.96 11 15 0.00039 0.029 14.3 1.0 1 23 504 526 504 526 0.98 12 15 2.6e-06 0.00019 21.2 0.8 1 23 532 554 532 554 0.99 13 15 7e-06 0.00053 19.8 0.4 1 23 560 582 560 582 0.97 14 15 2e-06 0.00015 21.5 2.6 1 23 588 610 588 610 0.96 15 15 2.8e-05 0.0021 17.9 1.5 1 23 616 639 616 639 0.98
Sequence Information
- Coding Sequence
- atgttaacgaaAAAACGGAACAAAAGTAAACGACAAACGATTGATCAGGAATATTCGACAAAAAGTTACCCTAGATCAGTAGACATGACGGATAAgagaatatacaataataacgatCGTGTTTCTAGTGAAGACGGCACAAAAGCCGACACAGATTTATATTTCAGCCGGCATTATGATAAAGAGTCAAACATTGCCAACAGCTCATCAACCAATCACAAAAATGTTCATGTAGAGAAATCTTCTTCCAAGTGTGACGTTTGCTTTAGAACGTTTATTAGCAAATCTAAATTATgtgtacacaaaaaaacacacaccgGCGAGAAACCACATGCGTGTGACGTTTGTGGACGATCATTTActacaaattcaaaattggtTAGACATAATAAAGTTCATACTGGTGTGAAACCTCATAAGTGCGACGTTTGTGGAAGATCATTTACGCAAAATAGCAATTTAGTTGTACATTATAGAACGCATACCGGCGAGAAACCGTATGCGTGTGACATTTGTAGACGATCATTTTcgcataaaagtaatttagttGTACATTATAGAACGCACGCCGGGGAAAAACCATTTACGTGCGATGTTTGTGGACGATCATTGAAGACGAAGAGTGATTTGGTTAAACATAATAGAATGCATACCAGGGAAAAACCATATGCATGTGGATGTTGTGAAAAAGAATTCTCAACTAGCGGTCATCGTTTAACACACATACTAAATGTTCATTTCAaatCCATAGCTCATCATAAACAAAATCAGCCGTTCATCACACTACTAGTCCAGAGCAGGATATCACTACATCATATGCATGATGTTCATCTAAATGCCTTTACATTCACCCGCTCGGTAGTTCAAAACGAACAAGAAGCAAAACCTTACAGCTCGCTGTCAgccGAAGAGGTTAGTacagaaaaaatgttaacgaaAAAACCAAACAAAAGTAAACGACAGACGACTGCTAAGGAATATTTGACAAACAGTTACCCTAGATCAGTGGACATGACGGATAATAGAACATACGATAATAATGATCGTGTTTCTAGTGAAGACGGCACCAAAGCCGACACAGATTTATATTTCAGCCGACATTATGATAAAGAGTCAAACATTACCAACAGCTCATCAACCAATCACAAAAATGTTCATGTAGGGAAATCTTCTTTCGAGTGTGACGTTTGCTTTAGAACGTTTATTAGCAAATCTAAATTATgtgtacacaaaaaaacacataccGGCGAGAAACCACATGCGTGTGACATTTGTGGACGATCATTTGCGAAAAAATCCGATTTGGCTATACATTATAGAACGCATACTGGTGAGAAACCACATGCGTGTGACCTTTGTGGACGATCATTTGCGAAAAAATCCACTTTGGTTTCACATTATAGAACGCATACTGGTGAGAAACCACATGCGTGTGACCTTTGTGAACGATCATTTTCGCAAAAATCCAAtttagttatacattatagaaCGCATACTGATGAGAAACCATATACATGCGATGTTTGTGGACGATCATTTGCGGAAAAACGGAGACtggattatcataataaaacgcATACCGGTGAAAAACCATATACTTGCGACGTGTGTGgagtatcatttataataaattcacattTAATTAGACATAATAGAACGCATACTGGTGTGAAACCTCATATATGCGACGTTTGTGGAAGAGCATTTGCGCTAAATAGAAATTTAGTTGTACATTATAGAACGCATACTGGTGAGAAACCACATGCGTGCAACGTTTGTGGACGACAATTTGCGCATAAATCCAGTTTAGTTGTACATTATAGAACGCATACTGGTGAGAAACCATATGAATGTGGCTATTGTGAAAAAGCATTCTCGAAGTTCAGTAATCGTAAAACACATATACAAAAAGTTCATTTCAaatgcttttaa
- Protein Sequence
- MLTKKRNKSKRQTIDQEYSTKSYPRSVDMTDKRIYNNNDRVSSEDGTKADTDLYFSRHYDKESNIANSSSTNHKNVHVEKSSSKCDVCFRTFISKSKLCVHKKTHTGEKPHACDVCGRSFTTNSKLVRHNKVHTGVKPHKCDVCGRSFTQNSNLVVHYRTHTGEKPYACDICRRSFSHKSNLVVHYRTHAGEKPFTCDVCGRSLKTKSDLVKHNRMHTREKPYACGCCEKEFSTSGHRLTHILNVHFKSIAHHKQNQPFITLLVQSRISLHHMHDVHLNAFTFTRSVVQNEQEAKPYSSLSAEEVSTEKMLTKKPNKSKRQTTAKEYLTNSYPRSVDMTDNRTYDNNDRVSSEDGTKADTDLYFSRHYDKESNITNSSSTNHKNVHVGKSSFECDVCFRTFISKSKLCVHKKTHTGEKPHACDICGRSFAKKSDLAIHYRTHTGEKPHACDLCGRSFAKKSTLVSHYRTHTGEKPHACDLCERSFSQKSNLVIHYRTHTDEKPYTCDVCGRSFAEKRRLDYHNKTHTGEKPYTCDVCGVSFIINSHLIRHNRTHTGVKPHICDVCGRAFALNRNLVVHYRTHTGEKPHACNVCGRQFAHKSSLVVHYRTHTGEKPYECGYCEKAFSKFSNRKTHIQKVHFKCF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -