Agos000793.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphis gossypii
Gene Symbol
-
Assembly
GCA_004010815.1
Location
NW:85201-93872[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 7.9e-05 0.006 16.5 2.8 2 23 144 165 143 165 0.97
2 16 1e-06 7.9e-05 22.4 2.2 1 23 175 197 175 197 0.99
3 16 2.3e-07 1.7e-05 24.5 0.6 1 23 203 225 203 225 0.99
4 16 5.1e-06 0.00038 20.3 3.1 1 23 231 253 231 253 0.99
5 16 8e-07 6e-05 22.8 1.8 1 23 259 281 259 281 0.98
6 16 0.00028 0.021 14.8 4.5 1 23 287 309 287 309 0.99
7 16 8.7e-05 0.0065 16.4 1.1 1 23 315 337 315 337 0.97
8 16 4.6e-05 0.0034 17.2 1.9 1 23 343 365 343 365 0.99
9 16 7.9e-05 0.006 16.5 2.8 2 23 925 946 924 946 0.97
10 16 1e-06 7.9e-05 22.4 2.2 1 23 956 978 956 978 0.99
11 16 2.3e-07 1.7e-05 24.5 0.6 1 23 984 1006 984 1006 0.99
12 16 5.1e-06 0.00038 20.3 3.1 1 23 1012 1034 1012 1034 0.99
13 16 8e-07 6e-05 22.8 1.8 1 23 1040 1062 1040 1062 0.98
14 16 0.00028 0.021 14.8 4.5 1 23 1068 1090 1068 1090 0.99
15 16 8.7e-05 0.0065 16.4 1.1 1 23 1096 1118 1096 1118 0.97
16 16 4.6e-05 0.0034 17.2 1.9 1 23 1124 1146 1124 1146 0.99

Sequence Information

Coding Sequence
atgttcgcAGAAAATGTTTTGGGCCATGTATCCGACATGGTAGAAATCATCAATGGGGAAATGCCGATATTGAACTCGCCTGGTGGAGGAGGATCGTCAGATTTCGTTCGCGTTGGTATCGACTGCACTCTAAGCCCGTTGAAGCCGGCAACTGCTACGACCGGTACCTTACACaatcaacaacaacaacaacaacagctgCACCAAAAGACGGCTATCGACGTCGCAGAGAACGCTTCCGAGGGATCGGCGGCGGCGATCAAGCGCGTGGTGTGCAGCCCGGACCTGCCGGTGTTCACCATTACGCCGGTGGTCGAAGAGGCGGCCGTGATCATCGACTCGGCTAAGACGGCGGCCGCAGCGGTTGCGGCCGCGCCGGCTGCACTGCCGTCAGCGCACACGGCCACCGCGGTATCCGACAAGTCTTTACAGTGCAACGTTTGCCACAAGATATTCATGCAGAAAAACGCTTTCCAAAATCACTTGCGATCTCACGTGAAGGACACGACGACAGACGGCCCGTTCCAGTGCAACTACTGCAGTAAGTCGTTCACGGTGCCGGCCCGACTGACGCGGCACTATCGAACGCACACCGGTGAAAAGCCGTACAAATGCGAATATTGCGACAAACCGTTCTCGGTCAAAGAGAACCTGAGCGTACACCGGCGCATCCACACCAAAGAGCGGCCGTACAAATGTGACGTGTGCGAACGGGCGTTCGAGCACAGCGGCAAGCTGCACCGGCACATGCGCATACACACCGGCGAGCGTCCGCACAAGTGTTCGTTCTGCGACAAGACGTTCATCCAGAGCGGCCAACTGGTCATTCACATACGCACGCACACGGGAGAAAAACCGTACGTGTGCAAAACGTGCGACAAGGGGTTTACGTGCTCCAAACAGCTCAAGGTGCACACGCGCACTCACACGGGCGAAAAGCCGTATTCGTGCGACATATGCGGTAAGTCGTTCGGCTACAACCACGTGCTCAAGCTCCACCAAGTGTCGCATTACGGCGAAAAAGTGTACAAGTGTACGATTTGTAATGGCACGTTCACGTCTAAGAAGACCATGGAGAGCCACATCAAGAGTCATTCGGACAACAGTGgcagtggtggtggtggtggaaCCGCATCCGGAGCCGCGGCTACCGCTAATGGCGTCCAGGTGACCGGCACCGCTGCGGCGGCATCGACCCCCGCGGGAGCGCTGGTCATTACCGTGCAATCGTCTAACAAAAAAGACATCGCCTCCGAGGGTGAAACTTCTTCGGGTTGTAGTAGCGACAAGGAAAACAGCAAGTCGACGGTGGCCGCGTCCGCCGCGGTATTGCTTCAGCTGTCCGAAGAACCGAAACGCGCCAATCTCCTTCTACAGCAGCCGACCGCGGCGACGGCTACCGTAATGGTTCGGGAAGACGGCGGCAATGGCATCGGAAAGtccgacgacgacgaagacgACGAGGACGAAGAGGAGGACGACGACGTGATGGTGATGGGTGTCGCTGACGTGGACACCGAACTCAACAAGCTGTGCCAGTACTTGTATCCCAGGTTACCGGGAAACAACCGCAAACGCAGTGATTACGAAGACGAAGATGACGACGAGTACAATTGTGACCAACCACCTAGTCCGGCTAGCAGCTCTTCGGGTTCGTTGACTTTGACCATGGACGTGTCGCCGCCACCAATAACTCGTCGACATCAATatcaacagcagcagcagcagcagcagcagcaacaacaacaacaacaacaacatcaacaacaacaacaacaacaacaacaacacatgcagcaacaacaacagcagcaacagcaacaacaacaacagcagcagcagcaacaacaacagcagcagcaactTCACCAACAACACCAAgaacagcagcagcaacaacaacgacaacagcagcagcagcagcaacagcaacaacaacaacagtcGTTTCACACGATGCAGACGGCTGCACAACAACAGCGACAGCAGCACGTGGATTATGTCATGAGGTTGGCTGCCGAAGATAGTGTATCTCCCGTCCGGTACGATACTCCAACCTCCGACGAGACCATGGAGATGCCGCCCGTCGTGTCGTTGACCGAGGTACCTTCACCGCCTCCGCAGTCGCAACCATCGCCACCGCTGCCCACGCAACCCAACGACCGAGATCACTTGAGTCTGCCTCCCCGGAAACGGTCAAAAATGATACTCAAGTCGATGGAGAGCACCGCCAAGAAAGAGGCGCAGTGCAGCCGATATAGCTCGGTAATACAGTACGCCAATAAAGCCTCAATTaataacactagttcatttttatatcgttttatatcatattttttttttatgttcgcAGAAAATGTTTTGGGCCATGTATCCGACATGGTAGAAATCATCAATGGGGAAATGCCGATATTGAACTCGCCTGGTGGAGGAGGATCGTCAGATTTCGTTCGCGTTGGTATCGACTGCACTCTAAGCCCGTTGAAGCCGGCAACTGCTACGACTGGTACCCTACACaatcaacaacaacaacaacaacagctgCACCAAAAGACGGCTATCGACGTCGCAGAGAACGCTTCCGAGGGATCGGCGGCGGCGATCAAGCGCGTGGTGTGCAGCCCGGACCTGCCGGTGTTCACCATTACGCCGGTGGTCGAAGAGGCGGCCGTGATCATCGACTCGGCTAAGACGGCGGCTGCAGCGGTTGCGGCCGCGCCGGCTGCACTGCCGTCAGCGCACACGGCCACCGCGGTATCCGACAAGTCTTTACAGTGCAACGTTTGCCACAAGATATTCATGCAGAAAAACGCTTTCCAAAATCACTTGCGATCTCACGTGAAGGACACGACGACAGACGGCCCGTTCCAGTGCAACTACTGCAGTAAGTCGTTCACGGTGCCGGCCCGACTGACGCGGCACTATCGAACGCACACCGGTGAAAAGCCGTACAAATGCGAATATTGCGACAAACCGTTCTCGGTCAAAGAGAACCTGAGCGTACACCGGCGCATCCACACCAAAGAGCGGCCGTACAAATGTGACGTGTGCGAACGGGCGTTCGAGCACAGCGGCAAGCTGCACCGGCACATGCGCATACACACCGGCGAGCGTCCGCACAAGTGTTCGTTCTGCGACAAGACGTTCATCCAGAGCGGCCAACTGGTCATTCACATACGCACGCACACGGGAGAAAAACCGTACGTGTGCAAAACGTGCGACAAGGGGTTTACGTGCTCCAAACAGCTCAAGGTGCACACGCGCACTCACACGGGCGAAAAGCCGTATTCGTGCGACATATGCGGTAAGTCGTTCGGCTACAACCACGTGCTCAAGCTCCACCAAGTGTCGCATTACGGCGAAAAAGTGTACAAGTGTACGATTTGTAATGGCACGTTCACGTCTAAGAAGACCATGGAGAGCCACATCAAGAGTCATTCGGACAACAGTGgcagtggtggtggtggtggaaCCGCATCCGGAGCCGCGGCTACCGCTAATGGCGTCCAGGTGACCGGCACCGCTGCGGCGGCTTCGACCCCCGCGGGAGCGCTGGTCATTACCGTGCAATCGTCTAACAAAAAAGACATCGCCTCCGAGGGTGAAACTTCTTCGGGTTGTAGTAGCGACAAGGAAAACAGCAAGTCGACGGTGGCCGCGTCCGCCGCGGTATTGCTTCAGCTGTCCGATGAACCGAAACGCGCCAATCTCCTTCTACAGCAGCCGACCGCGGCGACGGCTACCGTAATGGTTCGGGAAGACGGCGGCAATGGCATCGGAAAGtccgacgacgacgaagacgACGAGGACGAAGAGGAGGACGACGACGTGATGGTGATGGGTGTCGCTGACGTGGACACCGAACTCAACAAGCTGTGCCAGTACTTGTATCCCAGGTTACCGGGAAACAACCGCAAACGCAGTGATTACGAAGACGAAGATGACGACGAGTACAATTGTGACCAACCGCCTAGTCCGGCCAGCAGCTCTTCGGGTTCGTTGACTCTGACCATGGACGTGTCGCCGCCACCAATAACTCGTCGACATCAATatcaacagcagcagcagcagcagcagcagcaacaacaacaacaacatcaacaacaacaacaacaacaacaacacatgcagcaacaacaacagcagcaacagcaacaacaacaacagcagcagcagcaacaacaacagcagcagcaactTCACCAACAACACCAAgaacagcagcagcaacaacaacgacaacagcagcagcagcagcaacagcaacaacaacaacagtcGTTTCACACGATGCAGACGGCTGCACAACAACAGCGACAGCAGCACGTGGATTATGTCATGAGGTTGGCTGCCGAAGATCGTGTATCTCCCGTCCGGTACGATACTCCAACCTCCGACGAGACCATGGAGATGCCGCCCGTCGTGTCGTTGACCGAGGTACCTTCACCGCCTCCGCAGTCGCAACCATCGCCACCGCTGCCCACGCAACCCAACGACCGAGATCACTTGAGTCTGCCTCCCCGGAAACGGTCAAAAATGATACTCAAGTCGATGGAGAGCACCGCCAAGAAAGAGGCGCAGTGCAGCCGATATAGCTCGGTAATACAGTACGCCAATAAAGCCTCAATTTAA
Protein Sequence
MFAENVLGHVSDMVEIINGEMPILNSPGGGGSSDFVRVGIDCTLSPLKPATATTGTLHNQQQQQQQLHQKTAIDVAENASEGSAAAIKRVVCSPDLPVFTITPVVEEAAVIIDSAKTAAAAVAAAPAALPSAHTATAVSDKSLQCNVCHKIFMQKNAFQNHLRSHVKDTTTDGPFQCNYCSKSFTVPARLTRHYRTHTGEKPYKCEYCDKPFSVKENLSVHRRIHTKERPYKCDVCERAFEHSGKLHRHMRIHTGERPHKCSFCDKTFIQSGQLVIHIRTHTGEKPYVCKTCDKGFTCSKQLKVHTRTHTGEKPYSCDICGKSFGYNHVLKLHQVSHYGEKVYKCTICNGTFTSKKTMESHIKSHSDNSGSGGGGGTASGAAATANGVQVTGTAAAASTPAGALVITVQSSNKKDIASEGETSSGCSSDKENSKSTVAASAAVLLQLSEEPKRANLLLQQPTAATATVMVREDGGNGIGKSDDDEDDEDEEEDDDVMVMGVADVDTELNKLCQYLYPRLPGNNRKRSDYEDEDDDEYNCDQPPSPASSSSGSLTLTMDVSPPPITRRHQYQQQQQQQQQQQQQQQQHQQQQQQQQQHMQQQQQQQQQQQQQQQQQQQQQQQLHQQHQEQQQQQQRQQQQQQQQQQQQQSFHTMQTAAQQQRQQHVDYVMRLAAEDSVSPVRYDTPTSDETMEMPPVVSLTEVPSPPPQSQPSPPLPTQPNDRDHLSLPPRKRSKMILKSMESTAKKEAQCSRYSSVIQYANKASINNTSSFLYRFISYFFFMFAENVLGHVSDMVEIINGEMPILNSPGGGGSSDFVRVGIDCTLSPLKPATATTGTLHNQQQQQQQLHQKTAIDVAENASEGSAAAIKRVVCSPDLPVFTITPVVEEAAVIIDSAKTAAAAVAAAPAALPSAHTATAVSDKSLQCNVCHKIFMQKNAFQNHLRSHVKDTTTDGPFQCNYCSKSFTVPARLTRHYRTHTGEKPYKCEYCDKPFSVKENLSVHRRIHTKERPYKCDVCERAFEHSGKLHRHMRIHTGERPHKCSFCDKTFIQSGQLVIHIRTHTGEKPYVCKTCDKGFTCSKQLKVHTRTHTGEKPYSCDICGKSFGYNHVLKLHQVSHYGEKVYKCTICNGTFTSKKTMESHIKSHSDNSGSGGGGGTASGAAATANGVQVTGTAAAASTPAGALVITVQSSNKKDIASEGETSSGCSSDKENSKSTVAASAAVLLQLSDEPKRANLLLQQPTAATATVMVREDGGNGIGKSDDDEDDEDEEEDDDVMVMGVADVDTELNKLCQYLYPRLPGNNRKRSDYEDEDDDEYNCDQPPSPASSSSGSLTLTMDVSPPPITRRHQYQQQQQQQQQQQQQQHQQQQQQQQHMQQQQQQQQQQQQQQQQQQQQQQQLHQQHQEQQQQQQRQQQQQQQQQQQQQSFHTMQTAAQQQRQQHVDYVMRLAAEDRVSPVRYDTPTSDETMEMPPVVSLTEVPSPPPQSQPSPPLPTQPNDRDHLSLPPRKRSKMILKSMESTAKKEAQCSRYSSVIQYANKASI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-