Agos004243.1
Basic Information
- Insect
- Aphis gossypii
- Gene Symbol
- clz9_3
- Assembly
- GCA_004010815.1
- Location
- NW:13898-16531[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-08 2.8e-05 23.2 0.0 4 39 22 57 20 60 0.91 2 2 4.9 4.4e+03 -3.0 0.0 28 39 441 452 441 452 0.86
Sequence Information
- Coding Sequence
- ATGAATAATAGGTGGGTATTTGTAGTTATGGCTTCCAAACCTAAATTTAAGTACAACACTAATAGCATGGAAAATGCTATTAAGGCTGTTAGAGAAAAGAACATGAATGTTTACCGAGCAAGCTTAGAATTTAATGTTCCTAGGTCTAGTTTGCAGAATTTATTAGATGGTAAAGCAGATATAAATGTAAGGAAATTTGGACCAAAACCAGTTCTCGATCAGTACGAAGAGTTACTGGTGAAATGGATAGAGGTGATGTCTGAAAAAGGGTTTCCCATTGTAAGTAGCGATTTACTGTCTTCGGttgaaaaaatagtaaaagaaATGAAATTGGACACAAAATTTCCCAATGGAAAACCTGGCAAAAAAtggttaaagttatttatgaaTAGGCATCCTTCAATTGCAAAACGTACTGTTGAGAAAGTTACAAAATCCAGAGCTTGTGTAACTAAACAGCAAATCTTGAATTGGTTTTCGAACATTGAGTCATTTTTAATAGACTCTAATTTAAGGGATATTCTTGAGGATCCTAGTAGAATATTCAATACCGATGAATCTGGCTTCATGATGTGTCCGAAAGGAGAAAAAGTGTTAAGTATACGTggccaaaaaaatgtatatgaagtTGTagggaataataaaaaacagcaAATCACTGTACTTGTGAATGTTTCTGCAGACGGCATTGTAGCACCAACAATGGTCGTTTTTGCAGGTAAAAGATTGCCAAAAGGAATTGCCCAGACTATGCCGGAGGATTGGGCCATGGCCAAGTCAGACAAAGGATGGATAACTGGTGAAACGTTTTTTGAATATGTTCTCAATGTCTTTTATCCCTGGTTAGtagaaaaaaacatcaaacttccagttattttatttctggaTGGCCACGTATCTCATTTGACGTATCACTTAAGTGTATTTTGTGAAAGTAAAGGAATACATATAATTGCTTTTTACCCAAATGCTACACACATTCAACAGCCTCTCGACGTAGCTATGTTTGGGCCTTTAAAACAAGAATGGGCTAAAGAAGTCCACAAATGGCGTATGCAAACTCAAgaaccattaaataaaatgcaattttctCCTATGTTAAATACTGTGATTAAGACCAGGCTAACTGAAGCAACAATCAAAAGTGGATTTGCCACATGTGGTCTATATCCATGGAATCCCCAAGCTATCGATTATAGTAAGTGTTTAACTACTAGTTGTGATCCTGAACCTAGCAATCCTGATCCAGACAATATACCACTACCAACATCAGTAGaacttaataataaccaattaggacacaattatttagaaataataatcaataaacaaaCATTGCAACAATTTAAagaagaattaaataatgatgtatGGACGGGACCAACTGAAGCTAAAGATCTCTTTGAAGTCTGGAGAACAAGTTATTTGTTATCATCAGGAACAACAGTTGAAGAAGATCAATGTGTTATGATTGACAATTTAACACCAGAAACTTTTGATTACATACCAACTttgaacaaacaaatattagaGCCAAATGTAGAGACAATAGTTGAAAGTGTAGATTTATCTAATACTCCTAGTTGTAGCACTGCATTTCCTAAGGACCCTACATCTGaagaaaaaagaagaaataagTTGGCTGAAAAAATATCTCCTCATACAGGTGGAAAGGGAGTTCCATCACCTTTTAAAAAGAACCTCTTATGGCCAAAAACACcagaaaaaagaaataaagtaAACCGCAGGTTGCGCATGCCGTCGGTTGTTACGTCGAAAAAATTCCAagaatttgaagaaaaaaaactaaaagagAAACAAATCCAAGAACAATTGAAGGCAGAAAGAAAAAGGAAAAGGGAAGACAAGAAAAATGATTGTAAGGCAAAAAGAGTGACAAAAAAAAGAGGAATAGCAGAAGATGAAGATGAGGATTGGCAGTGTGCTGTGTGTTTGTGTCGATATAACTCTGAAGTTATAAGAGGTATAGTAAGACAATGGGTGGAGTGTGATGGTtgcaaaaaacaatttcatgtATAG
- Protein Sequence
- MNNRWVFVVMASKPKFKYNTNSMENAIKAVREKNMNVYRASLEFNVPRSSLQNLLDGKADINVRKFGPKPVLDQYEELLVKWIEVMSEKGFPIVSSDLLSSVEKIVKEMKLDTKFPNGKPGKKWLKLFMNRHPSIAKRTVEKVTKSRACVTKQQILNWFSNIESFLIDSNLRDILEDPSRIFNTDESGFMMCPKGEKVLSIRGQKNVYEVVGNNKKQQITVLVNVSADGIVAPTMVVFAGKRLPKGIAQTMPEDWAMAKSDKGWITGETFFEYVLNVFYPWLVEKNIKLPVILFLDGHVSHLTYHLSVFCESKGIHIIAFYPNATHIQQPLDVAMFGPLKQEWAKEVHKWRMQTQEPLNKMQFSPMLNTVIKTRLTEATIKSGFATCGLYPWNPQAIDYSKCLTTSCDPEPSNPDPDNIPLPTSVELNNNQLGHNYLEIIINKQTLQQFKEELNNDVWTGPTEAKDLFEVWRTSYLLSSGTTVEEDQCVMIDNLTPETFDYIPTLNKQILEPNVETIVESVDLSNTPSCSTAFPKDPTSEEKRRNKLAEKISPHTGGKGVPSPFKKNLLWPKTPEKRNKVNRRLRMPSVVTSKKFQEFEEKKLKEKQIQEQLKAERKRKREDKKNDCKAKRVTKKRGIAEDEDEDWQCAVCLCRYNSEVIRGIVRQWVECDGCKKQFHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -