Basic Information

Insect: Aphis glycines
Gene Symbol: salm
Assembly: GCA_009928515.1
Location: scaffold:63785-146485[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 4.6e-06 0.0004 20.8 0.9 1 23 668 690 668 690 0.98

2 6 9.2e-06 0.00078 19.9 2.1 1 23 696 718 696 718 0.98

3 6 0.019 1.6 9.4 4.1 2 23 1095 1116 1094 1116 0.97

4 6 4.1e-07 3.5e-05 24.1 1.4 1 23 1122 1144 1122 1144 0.99

5 6 9.5e-07 8.1e-05 23.0 2.1 3 23 1396 1416 1394 1416 0.96

6 6 6.9e-06 0.00058 20.3 0.8 1 23 1422 1444 1422 1444 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	4.6e-06	0.0004	20.8	0.9	1	23	668	690	668	690	0.98
2	6	9.2e-06	0.00078	19.9	2.1	1	23	696	718	696	718	0.98
3	6	0.019	1.6	9.4	4.1	2	23	1095	1116	1094	1116	0.97
4	6	4.1e-07	3.5e-05	24.1	1.4	1	23	1122	1144	1122	1144	0.99
5	6	9.5e-07	8.1e-05	23.0	2.1	3	23	1396	1416	1394	1416	0.96
6	6	6.9e-06	0.00058	20.3	0.8	1	23	1422	1444	1422	1444	0.98

Sequence Information

Coding Sequence: ATGTCCCGCAGAAAGCAATCCAGACCGGTCAAGGTCCTCGAGGATGGGTCAGAGGAAGAGTGCATCAGCGGTATCCCTCGCGGAGAACCAGGTGCGGCTGTCGTTGTCAACGGGCACCACGTATCCACGTCCACGCGTCGATTTGATGACGGTGCGACATCCATGACTTCGGACGATGAAGACGACGAAGAAAACGGGCCGATGCATGGCGAAAAGTTGCCGAGAAAATTGTCGAACACGTGCAGGCAATGCGCCATGGGATTCCTGAGCTTTTCCGAGCTGTCAGAACACAACAAGACGTGCGTGCTACGCACCGGAGTCGCGAACAACGCAGCCGACAACGATTTTGACCACAGAAACGATCACGACGATACTGACGGCATAGAGGACGACGACGAAGCAGACGACGACGAGGACGTCGTCGACGACACAGACGACATGGACGACATGGACGATTATCACCGTCACGGACACCACTACAACGCTGCCGGTCTGCAGGCGATGGCCGTGGCCGATCTGAGGAGCGGACGTCACAACAAAAACAACAACAACAATAACAACAACAATAATAACAACAATAAGGCTCACGAAGAGCAGCGCAGACAGCGACAGGACGCCGAGAACAACAACCGCCGTTACGGCGGCGGTCTTCCAGATTCCGCTGTGGTCGGCGGTGACGAAATCGTGGCTAGCGGCGGTGGCATGGCCGCCGATGACTCGTCCGCGTTGGTGCCGGTCGGTTTCCCGTTCGCCGCATACCAAGCTGCCGTCCAAGCTGCCGCCACCGCCGCGGCCGACGTGCCCGCGCTCCAACAGCAACAAAAAACGGCCGTCTCCAATCACAACAATCACGTGACGCTCGAAGCGCTCCAGCACACCAAAGTGGCTGTGGCCCAGTTCGCGGCCTCCGCGATGGCTGTCAACAACGGCACTGTCAACCACCCGAACGTGCTGCAAGACTTGGCCATTGTCAACTCGTCGTTGTACACATTACAACACCAGCAGATGATGCAGATCAGCCTCATCCAACAGCTCAGCCAACAGTTGCAGATAAGCCGTAGTTGCGGTGGCGCCGGCGGTACCGGAAGTATCGACGGCACCCTGTCCGTGTCGCCTCCAATGCTGAGCGACGGAAACGACGACGTGGTCTTGTCGGCCATGGCAGCTGTTGCGGCGGCTTCGCCGAACGAACTGCCCATGTCGCTGATGGCCATGTCACGGAACAGCGCCGAAATGTTGCACCAACACTTGATGCACCAGCATCAACAACAAGCCGGACGATCGCCTCCTCTTCCGCCGGCCGTCCCGCAACAGCTGTTGCCCGCAGTCACGCCGATTTCGATTCCGGTCCCCGTGCCGATGTCCGCGTCCGCTGCACAGTCCACTGGTGACTGCACCACGCAAACGCCACTGTTACAGCTCAGCCGATCTCCTTCGCCGTCCACATCGCGCTCGCCGACGCCCCCACCGGCGTCCATCATGATGCCCGAAATGCAACGCACCGGTTCGTCGCCACTGCAAGCCCTGCAAGGGTCCGCGGTACAAACAACGCTGTCGCCGCCGCAGCCACTCGCGTCCAACGCCGCCCAGACCGAGAGTGCCACTAAGCCTCCACCTCCGGCCGCCACAATCCAGTCTGCACAGACACAGCCATCTTCTTTTTCGGCGTCGACGTCGTTTTCGCTGACGCCATACACTTCGTCACCGATCGTAACGCATAATCATTCCATCCCGTCATGTTCCGTTTCCTCAGCGTTCGCGTCGTCCATCATCACCAACACGGATCCAGAACCGTCGCCCAGCGAACCCAACTCCCTGGAAAAGCTGCAGCGCCGCGCTGCAGAAGTGTTGGAAAGCGCCAGCCAAGGAATGATGGCCGGCAATCTCGTGGACGAGCTCTCGTTCAGAAAGTGCTCTGGCAGCGGTGGCAAAGGCAGCTCACTGTCACCGTATGACGGTAAATCTGCCGGTGGTGGAAGCCGAGGAGACAACTTTTACAAGCACAGGTGTCGATATTGCGGCAAGGTGTTTGGCAGCGACTCGGCTCTTCAAATACACATCAGATCGCACACGGGCGAACGTCCGTTCAAGTGCAATGTTTGCGGTAGTAGGTTCACCACCAAGGGTAACCTCAAAGTCCATTTCCAGAGACATACGTCAAAATTTCCTAACGTTAAAATGAACCCTTTGCCGGTTCCCGAACACTTGGACAGAGACTTCCCAGCTCTGATGCCACCGCACTTGAACCAGAGTCCACATCACCAGAATGGCGGCTGCAACTCACAAATGCCGACCAGTTCCACTGGCGCCGTTGCACCGCGGTCTCCGCTGTCTCATTCGTTTTCCATGGCATCATCCGCCTCGTCATTCCCGACTGCACTATCCAATCTATTCCGACCAAGTGGCAGCCATCATGGTCAGCGACAACAGCATCAGTCGTCCTCGACAGACATAGCCCTTCCATCGAACATTCAAATGCAACAACAGCAGCCCGCTGAACAGTTACTAATGACAAACCAACATCAACAACATCATCACCAACAACAACTTAACATTCACCAGCATCACCACAAGCAGCAGCAGCAACACCACATGTCAAATAATCACTCGTCATCGCTACAACTATTTCAGTTCAAACGTGAACAAGAGCAACCCGAAAACTTGAGCAAACCCTTGAACGCTGGTTGCTCGTCACGTGAATCGTCTATGCTGTCTCCTGCGCAGCTTTCTGAATCCAGTATGACGCGCAACAACAAAGATGACCCTACATCATCCGAGTACATCGACGATATGGCCGTGGACATCGACTCGGCTGACGCCGATGGACGTCAGCATGACATTGACGCCAACACTGACGAATTTAGTGTTGATACCAAGTACAGTGGTGAAGAGGAACGGACCAACAGCCCCGCTATGAATGACGGGTTGCAAGACCAACCTGAAAACCTATCCAACAAAAGTGGTAGAGTAATGATTTCCAGCCCGCCAATTATCACTTCGGACGAGTCATTTTCGCCAAGGCCGAGGTCCTCGTTATCGCGACACCGTGATTCTCGGGGCGCATCTCCCGTATCGATGTCGTTCCACAACAGCAGATACTCGCCACCTGGCGCTCTAGATTTAACACCAAAACAGTCGGCATTGACCACCACTGCTAATCATATCATGTCCGCGTATTTGCCACCGGCGTTCGCTGGGCTCATGTCAGGTTCCGCCAATTCTACTGCCGGACTTCCGGGCCACGGACCATCATTCGGACCATCCGCTGCTCGAGGAAATACCACGTGTAACATCTGTTTCAAAACGTTCGCGTGCCACTCTGCTCTCGAGATCCACTACAGAAGCCATACCAAAGAGCGACCATTCAAATGTACCGTGTGCGACCGAGGATTTTCGACAAAGGGTAATATGAAACAGCACATGCTAACGCATAAGACTCGAGACATGTCGTCGACGGGCGCCGGTGGAGGCAGCTCGTCGAACAACATGTTCGACGGCAACAATTCGACTAGCTGCGGTCACGACGACACGAGCAACGCGAGCTCCGAAAGCCGGGACGCGGCCCAGCATCATTTGCATCACCAACAGCACCAGATGCACCAGATGCATCATCAGCAGCAGATCATGCTTTTGAGCGTAGCGGCACAAAACGCCGCAGCCGCCGCGGCTGTGGCAGCGGTCACGGGATCATCGTCATCAGGAACAGCTACCAGCGGAGTCGGATCTCGATCTCTGCCACCACCGCCGCCACCGCTGCCGCCACCACCGCCGGTTGTATTGCAACAGCCTACAAACGGTTTGATGCCCGCGGTGTCCAGTAGCGCGACTACGATATCGGCAAACGCTTCCACGTGCACCGGGCCTTCGTTGACCAGTACCGCGGTCCAGTCGGTCGCCGACTTGTCCCCGCCACCGGTGCAACAGCGCGCCGCATCTGCTCAGACGCCCCCGTCACAACCACCGTCGACCAAATCCTCGATCCAGCCAGTAGTTACACTGTCCGTACCCACCGTCGGTCAACAGCATCAACAGTACAATGCCCCAGGCTCCGGTTCCAGAAAACCGCCACCCGCAACCGAGGGCGGTATGTCGTCTTCCTCGTCATCATCGCCGAAACGCCCATTGGCAGATCCTGAAGCTGGCCTGCCGTCGGCCAAGAGACAAGCAAGTTCACCCAAACATTTGTGTCAAGTGTGCAACAAGAACTTTTCTTCGTCCTCCGCACTACAAATTCACATGAGGACTCACACTGGTGACAAGCCATTTCGTTGCACGGTGTGCATGAAAGCTTTCACGACCAAAGGCAATCTCAAGGTGCACATGGGAACACACATGTGGACAAATGGAACATCCAGGAGAGGGCGAAGAATGTCGCTTGAACTTCCGCCTTTGCAAATCGCCAACAATGTAAAAGAAACTGACTTCCTCCAACGTAGACCAGAAATCTATTATCATCCATTTCTTCCCAGTCCTTTTTTAAATGGAATTCACCAACAAAAGATCAACGAGATATCTGTAATCCAGAACGTTAACAGCAACGTCAACAATCGCATTCTCAGTGGATTTGGTAATTTCGGAGGTGGTGGTACGTTTCCTGGCGATATGATGAAACAGGAGCAAAGCATCGCCGCCGACAAACAGAACAACGTCATGTCTTCGTCTTCGTCTCCGCCGTCCCATCACATGAGGACACCGCCGCTTTGGGACTTGCACTATGATCGGCAGACAGCCGTCAACCATAAGTCCGCCGACGACCATCAGCTAAACAACTGCGAACACCAATCGCCACAATCGTCACCGATAGCGCACACAAACCACATTTCTCAGAACCGCACTGAGGGTTTGGCTACATAA
Protein Sequence: MSRRKQSRPVKVLEDGSEEECISGIPRGEPGAAVVVNGHHVSTSTRRFDDGATSMTSDDEDDEENGPMHGEKLPRKLSNTCRQCAMGFLSFSELSEHNKTCVLRTGVANNAADNDFDHRNDHDDTDGIEDDDEADDDEDVVDDTDDMDDMDDYHRHGHHYNAAGLQAMAVADLRSGRHNKNNNNNNNNNNNNNKAHEEQRRQRQDAENNNRRYGGGLPDSAVVGGDEIVASGGGMAADDSSALVPVGFPFAAYQAAVQAAATAAADVPALQQQQKTAVSNHNNHVTLEALQHTKVAVAQFAASAMAVNNGTVNHPNVLQDLAIVNSSLYTLQHQQMMQISLIQQLSQQLQISRSCGGAGGTGSIDGTLSVSPPMLSDGNDDVVLSAMAAVAAASPNELPMSLMAMSRNSAEMLHQHLMHQHQQQAGRSPPLPPAVPQQLLPAVTPISIPVPVPMSASAAQSTGDCTTQTPLLQLSRSPSPSTSRSPTPPPASIMMPEMQRTGSSPLQALQGSAVQTTLSPPQPLASNAAQTESATKPPPPAATIQSAQTQPSSFSASTSFSLTPYTSSPIVTHNHSIPSCSVSSAFASSIITNTDPEPSPSEPNSLEKLQRRAAEVLESASQGMMAGNLVDELSFRKCSGSGGKGSSLSPYDGKSAGGGSRGDNFYKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTSKFPNVKMNPLPVPEHLDRDFPALMPPHLNQSPHHQNGGCNSQMPTSSTGAVAPRSPLSHSFSMASSASSFPTALSNLFRPSGSHHGQRQQHQSSSTDIALPSNIQMQQQQPAEQLLMTNQHQQHHHQQQLNIHQHHHKQQQQHHMSNNHSSSLQLFQFKREQEQPENLSKPLNAGCSSRESSMLSPAQLSESSMTRNNKDDPTSSEYIDDMAVDIDSADADGRQHDIDANTDEFSVDTKYSGEEERTNSPAMNDGLQDQPENLSNKSGRVMISSPPIITSDESFSPRPRSSLSRHRDSRGASPVSMSFHNSRYSPPGALDLTPKQSALTTTANHIMSAYLPPAFAGLMSGSANSTAGLPGHGPSFGPSAARGNTTCNICFKTFACHSALEIHYRSHTKERPFKCTVCDRGFSTKGNMKQHMLTHKTRDMSSTGAGGGSSSNNMFDGNNSTSCGHDDTSNASSESRDAAQHHLHHQQHQMHQMHHQQQIMLLSVAAQNAAAAAAVAAVTGSSSSGTATSGVGSRSLPPPPPPLPPPPPVVLQQPTNGLMPAVSSSATTISANASTCTGPSLTSTAVQSVADLSPPPVQQRAASAQTPPSQPPSTKSSIQPVVTLSVPTVGQQHQQYNAPGSGSRKPPPATEGGMSSSSSSSPKRPLADPEAGLPSAKRQASSPKHLCQVCNKNFSSSSALQIHMRTHTGDKPFRCTVCMKAFTTKGNLKVHMGTHMWTNGTSRRGRRMSLELPPLQIANNVKETDFLQRRPEIYYHPFLPSPFLNGIHQQKINEISVIQNVNSNVNNRILSGFGNFGGGGTFPGDMMKQEQSIAADKQNNVMSSSSSPPSHHMRTPPLWDLHYDRQTAVNHKSADDHQLNNCEHQSPQSSPIAHTNHISQNRTEGLAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00973288;
90% Identity: iTF_00134838;
80% Identity: -