Agly013319.1
Basic Information
- Insect
- Aphis glycines
- Gene Symbol
- -
- Assembly
- GCA_009928515.1
- Location
- scaffold:6190450-6218665[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0027 0.23 12.1 3.5 1 21 7 28 7 29 0.95 2 17 1.3e-05 0.0011 19.4 1.4 1 23 37 60 37 60 0.93 3 17 0.18 15 6.4 0.3 2 20 92 114 91 116 0.87 4 17 0.0021 0.18 12.5 1.0 1 21 150 171 150 172 0.93 5 17 3.6e-08 3.1e-06 27.5 0.3 1 23 180 203 180 203 0.97 6 17 4.9 4.2e+02 1.8 1.4 3 12 232 242 231 254 0.71 7 17 2.1 1.8e+02 3.0 1.4 3 21 282 304 281 305 0.69 8 17 0.043 3.7 8.3 7.0 1 23 313 336 313 336 0.92 9 17 9.8 8.4e+02 0.9 0.9 3 13 354 365 353 377 0.83 10 17 3.7 3.2e+02 2.2 0.4 3 12 398 408 397 421 0.79 11 17 0.00022 0.019 15.5 2.3 1 20 429 448 429 450 0.96 12 17 0.41 35 5.2 0.8 3 20 480 501 479 503 0.85 13 17 0.95 81 4.1 1.4 3 20 533 554 532 556 0.85 14 17 0.00034 0.029 14.9 1.1 2 23 565 587 564 587 0.93 15 17 0.00043 0.037 14.6 2.8 1 23 777 800 777 800 0.95 16 17 1.4 1.2e+02 3.5 0.8 3 14 822 834 821 844 0.86 17 17 6.5e-05 0.0055 17.2 0.5 1 23 853 876 853 876 0.97
Sequence Information
- Coding Sequence
- ATGCCAACTTTCGATCGGTTCTATTGCCCACGAGGATGTGGTCGAAGTTATAAAAGAAAAGATCACTGTTGGCGACATATTAAATATGAGTGTGGAGTACCAAGACAATTCAAATGCCTATATTGCTCAAGAAGTTTTGCGCACAACAGTGCTTTAAAAAAACACGTAGTAGTTGTTCATAAAATATTACAGAAAGATTTAGCTAATCGGCGATCTCAAAAAGAAAAATATTTCATTAACCAATTAAATTCTTTAGCTGTTATTGATCCTGTGGAGTGTCCTAATAATTGTGGTCGGGCTTACAAAGGATTACGCCGAAAACACTCTTTAAAACGGCATTTGTTGTATGAATGCGGGAAACCACCTCAGTTTCAATGCATTGTCTGTTTAAAAAGATTTACTAACAAAAAAATTAACTCGAAGCGGTTATTTACATTTCCACTGAAATATTTATGCCCTAGAAATTGTGGACGTTCATATAATCATCGTGCTACCATGAATCGTCACTTAAAATATGAATGTGGTGTTCCGCCTCGGTTTAAATGCAACATATGTGGAAAAATGTTTGCACAAAAAGTTAACCTGAACACACATATCATGTCTGTTCATTGCAAAATTCCAACTACTTCACAGTTTTCTAATCAGAGACTATTGGCTCGTATTAATGAGTTTGTCCAAAATGACCCAGCTTATTGTCCACGAAATTGTGGTCGAAGCTATAAAGGAAAGTGGCGTAAAACAAATCTTAGAAATCACTTGGTTTATGAATGTGGATTACCGTGCATGTTTAAATTGAAAATCTCAGAAAGATTAGAAATGGCAGCATTATTTGATCCGGCTATATGTCCAAACCAATGTGGTCGTCAATACAAGGGAAAAAGAAGAAAATCGAATTTAAAAGTTCATCTTAAGTATGAATGTGGTGTACCACGTCAATTTAGATGTGACTGCTGCCATAGGACCTTTGTTCATAAGGCACATTTAAAAGGACATATGGGTCTTGTTCATGAGTTAATGACAAAAATGTTAAAAGAAATTTCAAAACAAGATCCAGTAGATTGTCCTAATCAATGTGGACGAAAATATTCTGGAAAGTATAGAAAAACTGTTTTAACTAATCATCTCAGGTATGAATGTGGAAAAGCACCAACATTCCAGTATGACATGGTTTATAGTGAAGGCATGGAGTTTTGCCCAAATATGTGTGGACGCAGTTATAGAGGAAGATATCGCACTAAAAATATTAAACGACATTTAAGATATGAATGCGGTGTTCAACCAAAATTTCAATGTGATATATGTTTGAAGCGTTTTACTCATAATTCAGATAGAAAAAAACATATGTATTTAGTTGATTGTTTTTTTTTTTCAGAAGTAAATTCCAAATGGTTGAACTCAAATATATTAAAAATATTATCAAAAACAGATCCTGCAATTTGCCCAAATAAATGTGGTCATAAATATAAAGGAATAAGTAGAAAAGCTCACCTCAAAAGACATTTAATTTACGAGTGTGGAGTACCGAAAAAATTTAACTAACTGAGACACAAATGGTTATCTCAATTAAACAAATTGTCCATAAATGATCCAGCTATTTGTCCAAATATGTGTGGTCGCAAATATAAAGGCTTAAGGAGAAAATGTCATCTCAAACGTCATTTAATTGATGAGTGTGGTGTGCCAAAAAAATCTCAATGTCACTTATGTCTTAAACGTTTTGCACAAAATGATACTTTAAAATCTCATTTAGTAATAGTTCATAAGCAAATTCCATTACATCGAAGCCGTTCAAAAAAATGGTTACATTTGCTGTATGAAATATCAAAAGCTGATCCAGTGTATTGTCCAAATCGATGTGGTCGCTGTTACAAAGGAGAACAACGGAGAGTTCTTACCAATTCATACTGGATGACCAAACTGGATGCTATATCTATATCAAACCCTGCCATATGCCCGAACGTCTACTGCATGCGGAAATACAAAGGAATGCATAGAAAAAAGTTATTAAAACGACATTTGATGTATGAATGTGGCGTACCTAAGCAATTTCAATGTTTTGAATCCACTAAATGGTGTCAGTTAGATGAGTTCTGCAAGACTGATCCAGCCATATGTCCGAACAGTTGTGGTCGCAAATATAAAGGCCAGTACCGAAAACAATTACTCAAAAGACATTTAACTCATGAGTGTGGTGTACCTCGTAAATTTCAGTGAAAGATGATTGAATTGTTATATTGTCCAAATAACTGTGGCCGATATTATAGTGGTGATTGGAAGAAATCTAGTTTGCAACGTCATTTGAAACACGAATGTGGAGTTCCAAAAAAATTCATTTGCTTAATTTGTTATAGACGATTTGCTAGAAAAACACATCTCAACTCACATACTTTAATTAAACACCAAACTCATTTTCTGCAATTACTCGAATCAACAAATAAAAACTCTCTTCAGGATCCTGTGTTTTGTCCTAATGACTGTGGACGTAGTTATAAAGGGAAAAGTCGTAAATATGTACTGAAAAGACACGTGATGTACGAATGCCAAACTCCACCACAGTTTTCATGTCCCGTTTGCTTGCGGCCATTCAAGCGTAAAGATGAAATGATTATACATCAACAAAAGAAACACAATATTTTTGAATAA
- Protein Sequence
- MPTFDRFYCPRGCGRSYKRKDHCWRHIKYECGVPRQFKCLYCSRSFAHNSALKKHVVVVHKILQKDLANRRSQKEKYFINQLNSLAVIDPVECPNNCGRAYKGLRRKHSLKRHLLYECGKPPQFQCIVCLKRFTNKKINSKRLFTFPLKYLCPRNCGRSYNHRATMNRHLKYECGVPPRFKCNICGKMFAQKVNLNTHIMSVHCKIPTTSQFSNQRLLARINEFVQNDPAYCPRNCGRSYKGKWRKTNLRNHLVYECGLPCMFKLKISERLEMAALFDPAICPNQCGRQYKGKRRKSNLKVHLKYECGVPRQFRCDCCHRTFVHKAHLKGHMGLVHELMTKMLKEISKQDPVDCPNQCGRKYSGKYRKTVLTNHLRYECGKAPTFQYDMVYSEGMEFCPNMCGRSYRGRYRTKNIKRHLRYECGVQPKFQCDICLKRFTHNSDRKKHMYLVDCFFFSEVNSKWLNSNILKILSKTDPAICPNKCGHKYKGISRKAHLKRHLIYECGVPKKFN*LRHKWLSQLNKLSINDPAICPNMCGRKYKGLRRKCHLKRHLIDECGVPKKSQCHLCLKRFAQNDTLKSHLVIVHKQIPLHRSRSKKWLHLLYEISKADPVYCPNRCGRCYKGEQRRVLTNSYWMTKLDAISISNPAICPNVYCMRKYKGMHRKKLLKRHLMYECGVPKQFQCFESTKWCQLDEFCKTDPAICPNSCGRKYKGQYRKQLLKRHLTHECGVPRKFQ*KMIELLYCPNNCGRYYSGDWKKSSLQRHLKHECGVPKKFICLICYRRFARKTHLNSHTLIKHQTHFLQLLESTNKNSLQDPVFCPNDCGRSYKGKSRKYVLKRHVMYECQTPPQFSCPVCLRPFKRKDEMIIHQQKKHNIFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00134895;
- 90% Identity
- -
- 80% Identity
- -