Basic Information

Insect: Aphis glycines
Gene Symbol: -
Assembly: GCA_009928515.1
Location: scaffold:2361428-2380133[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 3 2.5e+02 2.5 0.8 2 11 165 174 164 175 0.91

2 17 0.08 6.8 7.5 0.1 2 23 188 207 187 207 0.78

3 17 0.037 3.2 8.5 0.4 1 23 219 242 219 243 0.96

4 17 0.28 24 5.8 0.5 1 20 284 303 284 305 0.94

5 17 0.025 2.1 9.1 1.0 2 17 311 326 311 332 0.77

6 17 0.13 11 6.8 0.5 2 23 343 365 342 365 0.94

7 17 1.4e-05 0.0012 19.3 0.4 2 23 372 393 372 393 0.97

8 17 0.001 0.085 13.5 1.0 1 23 399 421 399 421 0.96

9 17 7.2e-05 0.0062 17.1 2.3 1 23 427 449 427 449 0.99

10 17 5.7 4.9e+02 1.6 0.0 3 23 462 483 460 483 0.93

11 17 0.061 5.2 7.8 0.3 2 23 509 531 508 531 0.91

12 17 0.0046 0.39 11.4 1.5 1 23 543 565 543 565 0.97

13 17 0.025 2.1 9.1 3.6 1 23 618 641 618 641 0.97

14 17 0.04 3.4 8.4 0.7 1 23 658 681 658 681 0.94

15 17 2.6e-05 0.0022 18.5 3.9 1 23 691 713 691 713 0.96

16 17 0.061 5.2 7.8 0.1 2 23 768 789 767 789 0.95

17 17 0.96 81 4.1 0.1 2 23 802 823 801 823 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	3	2.5e+02	2.5	0.8	2	11	165	174	164	175	0.91
2	17	0.08	6.8	7.5	0.1	2	23	188	207	187	207	0.78
3	17	0.037	3.2	8.5	0.4	1	23	219	242	219	243	0.96
4	17	0.28	24	5.8	0.5	1	20	284	303	284	305	0.94
5	17	0.025	2.1	9.1	1.0	2	17	311	326	311	332	0.77
6	17	0.13	11	6.8	0.5	2	23	343	365	342	365	0.94
7	17	1.4e-05	0.0012	19.3	0.4	2	23	372	393	372	393	0.97
8	17	0.001	0.085	13.5	1.0	1	23	399	421	399	421	0.96
9	17	7.2e-05	0.0062	17.1	2.3	1	23	427	449	427	449	0.99
10	17	5.7	4.9e+02	1.6	0.0	3	23	462	483	460	483	0.93
11	17	0.061	5.2	7.8	0.3	2	23	509	531	508	531	0.91
12	17	0.0046	0.39	11.4	1.5	1	23	543	565	543	565	0.97
13	17	0.025	2.1	9.1	3.6	1	23	618	641	618	641	0.97
14	17	0.04	3.4	8.4	0.7	1	23	658	681	658	681	0.94
15	17	2.6e-05	0.0022	18.5	3.9	1	23	691	713	691	713	0.96
16	17	0.061	5.2	7.8	0.1	2	23	768	789	767	789	0.95
17	17	0.96	81	4.1	0.1	2	23	802	823	801	823	0.90

Sequence Information

Coding Sequence: ATGAGAATTTCAAAGAAAAAGAAAAAGGAAGAAAAGTTTGAACATATGGTGAGAGCAAGCGTAACGTACACGCAGACCGAAAACGGACATCCGGTAGTGTTGATGCCGGCCAACACTGGACCTTCAAAACCGAAAGCGGTGTGCTTTCGAAAACCCCAGAAACGTCGCTCCTTCGCGGCGTCGCGTTGTCACCGGACGTCGTTCGACCTGACGAATCAAGTGATCGTTTACTTCGAACCGGGAGGCAGCGGAAGATACGAAGTGGTCGGCGGCAAGACTCCGGGTCACGGCAATGTTGAGGACTCCGCCACAGGACAAAAGTCCGTCGGGCGTACCGCAGAACCTACACCGGTGGACGCGAACCGGAAAGGTAGGCCCAAGGGATCCAAGAACAAATCTCCACCATCGTCGTCTGCAACGCCATCCGGATCCGTCGCGTTCAACTACCGGTGCGAGAAGAAGTCGCTGACGTACACGTTCGCTGGCCCTGTGAAGTGCAAGTCGTGCGATCGGACGTTCAACGGCGATCCGGTGGCCCACTGTCTAAAGCACCATAAGACCGTGTGTCCCATATGTGGGCGGACGTACCGGCCACCGCTGTCCACGCACATCAAGTCGCACGGGACCCAACACGCGTCGCTGACCGTTTCCTGTTACGAGTGTTATGCGTGCAAGGAGAAGTTCGGCGACGAGTCGACCATGGCCGAACACGTGCGATCAGCGCACCACGTCACGACCGCCGCCGAGTGTCCGCTGTGCGGCGTCACCGGATTCGAGACCGTCGGCACGGCCGTCAATCACCTGGTGGAAGTCCACTGTCCACAGAAGACGTTCAGCCACCCGACGGTGTACCGGTGCCGGGTGTGCCTGGCCGGGTTCAAGAGCCAAATAAACGTGCTGCGGCATGCGTGTAATAAGATCAAGTCACCTCAGTGCACGGAGTGCGGCAAGACGTTCCCGTCCAAAATGCGGTACGCGTTCCACTTGCAGTTTCACGAGCACCCGAAGTGGGCCACCATGCACCTGCACTGCGACCTGTGCCTGGCCGAGTTCGAAGACGAGTATCAGCTGTACGATCACATCCGGTTCCGGCACGAGCTACACGACAAGGCAGTGTGCGAGGTGTGCGGCCGAACGTTCAAGTCGTCAATGGGCTTGAACATCCACCGCCGATATCACAACGGGTCCCGGGACTTTGCGTGCAAGTCGTGCGACAAATCGTTCCTGAACAAATCCACGCTCCGCGAGCACGAGATCTCGCACATGGAAGTCAAACCGTTCCAGTGTCACATATGCGGCCAGTACCTGAGCCGCGCGTCCAGGCTCCGGTCGCACGTCAAGACGCACCGGGCTGCCGAGTCGACCGAGCAGACGTGTTACGGGTGCGCTCGGTGCGGTTACGTGGCGCCCAACCCGACCACGGTCGCCGAACACACGAGCAAGGAACACTTCGACGACGACGCGCTGTTGACGGCGACGGTGGAAAAATACGGATGTTACGCGGTGAGACTGTCGTCGGTGGTCAAGTGCGAGTACTGCGACTCCACGTACCTGGACGCGGTGCACTTGAACCGACACAGAGACGCGGCGCACGCGGGCGGAGGAGCCGTCGACGGGGACGAGGCGTTCATCTGCGTGGTGTGTTCGTCCACGTTCAGCACTTACTCCAGACTGACCACGCACAAGTTAACACACGGCATAAACATGGAGTCCTCGTGCGCCGCGTCCGTTAAGCCCGACCGATTCGAAATACCGCAGTTTTTCTCTTGCGAATACTGCGCCAAGATGTGCTTACACTACACGTACTTTTGCCTGCACCGGCGACTGAAACACCCGCCCGACGTGCAGACGCACGTGTGCGAACATTGCGCCATGGAGTTCAAGACTTCGTGGAGACTGACGTACCACAAGAAAACGGCGCACGGTCAATCCGCCGCGACAGCCGACGCAGACGAGAAGCCGGCCGAGATGTTCAATTGCAGCGTGTGCTCTCGGCAGTTCGTCAAGATCGGCGCGCTCAACTTGCACAAGACCCGCACGCACATCGACGTGGTCGGCGACGTGTGCAAGTACCTGTGCCACCAGTGCGGCAAGTTTTTCAGCTCCGAGTTTTCGCTCAAGTCGCACGTCAAAACTCACGATTTCGTTGTTGGCGGCAGTGGCGGCGCTGACGATCGCGAAAACAAATCCTTCGTCGATTTCGACGAGGCGACGTCGCAGACGCGGCCGAATAACCGGCGCCGCACGTACCGGAAATCGGTGACAAACGCCGCTGCACGTCCTACGACGCCGGTCAAGCAGTCGTGTCCGTACTGCACCCAGACGATCGACGACAAGGCGACGTTCATCGAACACGTCAACGGTCACCTCAGAGATTGCAAGCCCGTGTTGCCGGCGGGCACGGTTTGCGAGCTGTGCGACGCGCGTTTTGGCGACTCCACGATACTCAAATACCACCTGGACGACCACGTGAAAATGAACCAAGCCATTCTGTGCCGGGCGTGCTACTCACCGTTTCTGTCGGAGGCCGCGCACGACGCGCACGTGGCCTCGACGTGCGAGTTCGCGACGATGCCGGTCAACGCTTTCGTGAACTCGGCCCCTGCCGACGCTCAGCCCGACGTCAAGTTCATCGGCGTATCTGACGCCCCGCAAGCCGACGTCCTTCCGCTGATCGTCGACTGTTCGGAGATTTTCGGCAAGAGCACCACGACGATCACGTCATCGTTTACAGTCGACCTAAAATCCATCGATCTGCAGTCCGCCGAGCTACTGTCCACCGAGCTGCAGTCCACCGAGCTGCAATCCACCGAGCTGCAGTCCGCCGAGCTGCAGTCCACCGAGCTGCAGTCCACCGAGCTGCAGTCCGCCGAGCTGCAGTCCACCGAGCTGCAGTCCACCGAGCTGCAGTCCGCCGAGCTGCAGTCTGCCGAGCTGCAGTCCGCCCAGCTGCAGTCCGCCGAGCTGCAGTCCGCCGAGATGCAGTCAGTCGTGATGCAGTCCACCGAGCTGCAGTCCGCCGAGCTGCAGTCCGCCGAGCTGCAGTCCGCCGAGCTGCAGTCCGCATTCAAGGAACCATCAGCCGACGATAAATTCATGGAATCGTCCGTAGTCGACGAGCTCCTGTCTATAATATCCACGCCTCGATCTTCGGCCACGCTGGATACGATTGATTTCCAACAATCAGACTACATGTCGTTGGAAGAAATATTCAACAGCATCTCCTCTTTGGACTGA
Protein Sequence: MRISKKKKKEEKFEHMVRASVTYTQTENGHPVVLMPANTGPSKPKAVCFRKPQKRRSFAASRCHRTSFDLTNQVIVYFEPGGSGRYEVVGGKTPGHGNVEDSATGQKSVGRTAEPTPVDANRKGRPKGSKNKSPPSSSATPSGSVAFNYRCEKKSLTYTFAGPVKCKSCDRTFNGDPVAHCLKHHKTVCPICGRTYRPPLSTHIKSHGTQHASLTVSCYECYACKEKFGDESTMAEHVRSAHHVTTAAECPLCGVTGFETVGTAVNHLVEVHCPQKTFSHPTVYRCRVCLAGFKSQINVLRHACNKIKSPQCTECGKTFPSKMRYAFHLQFHEHPKWATMHLHCDLCLAEFEDEYQLYDHIRFRHELHDKAVCEVCGRTFKSSMGLNIHRRYHNGSRDFACKSCDKSFLNKSTLREHEISHMEVKPFQCHICGQYLSRASRLRSHVKTHRAAESTEQTCYGCARCGYVAPNPTTVAEHTSKEHFDDDALLTATVEKYGCYAVRLSSVVKCEYCDSTYLDAVHLNRHRDAAHAGGGAVDGDEAFICVVCSSTFSTYSRLTTHKLTHGINMESSCAASVKPDRFEIPQFFSCEYCAKMCLHYTYFCLHRRLKHPPDVQTHVCEHCAMEFKTSWRLTYHKKTAHGQSAATADADEKPAEMFNCSVCSRQFVKIGALNLHKTRTHIDVVGDVCKYLCHQCGKFFSSEFSLKSHVKTHDFVVGGSGGADDRENKSFVDFDEATSQTRPNNRRRTYRKSVTNAAARPTTPVKQSCPYCTQTIDDKATFIEHVNGHLRDCKPVLPAGTVCELCDARFGDSTILKYHLDDHVKMNQAILCRACYSPFLSEAAHDAHVASTCEFATMPVNAFVNSAPADAQPDVKFIGVSDAPQADVLPLIVDCSEIFGKSTTTITSSFTVDLKSIDLQSAELLSTELQSTELQSTELQSAELQSTELQSTELQSAELQSTELQSTELQSAELQSAELQSAQLQSAELQSAEMQSVVMQSTELQSAELQSAELQSAELQSAFKEPSADDKFMESSVVDELLSIISTPRSSATLDTIDFQQSDYMSLEEIFNSISSLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00136364; iTF_00134807;
90% Identity: iTF_00136364;
80% Identity: -