Basic Information

Insect: Aphis glycines
Gene Symbol: -
Assembly: GCA_009928515.1
Location: scaffold:190785-264400[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 3.1e-08 2.6e-06 27.7 1.7 1 23 336 358 336 358 0.98

2 8 7.5e-05 0.0064 17.0 1.8 1 23 364 386 364 386 0.97

3 8 3.9e-06 0.00033 21.0 0.2 2 23 395 416 395 416 0.97

4 8 5.6e-06 0.00048 20.6 0.8 1 23 422 444 422 444 0.98

5 8 1.4e-06 0.00012 22.4 8.1 1 23 450 472 450 472 0.97

6 8 1.8e-06 0.00015 22.1 1.1 1 23 478 500 478 500 0.98

7 8 3.4e-05 0.0029 18.1 4.9 1 23 506 528 506 528 0.97

8 8 2.5e-06 0.00021 21.7 1.0 1 22 534 555 534 555 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	3.1e-08	2.6e-06	27.7	1.7	1	23	336	358	336	358	0.98
2	8	7.5e-05	0.0064	17.0	1.8	1	23	364	386	364	386	0.97
3	8	3.9e-06	0.00033	21.0	0.2	2	23	395	416	395	416	0.97
4	8	5.6e-06	0.00048	20.6	0.8	1	23	422	444	422	444	0.98
5	8	1.4e-06	0.00012	22.4	8.1	1	23	450	472	450	472	0.97
6	8	1.8e-06	0.00015	22.1	1.1	1	23	478	500	478	500	0.98
7	8	3.4e-05	0.0029	18.1	4.9	1	23	506	528	506	528	0.97
8	8	2.5e-06	0.00021	21.7	1.0	1	22	534	555	534	555	0.95

Sequence Information

Coding Sequence: ATGCACTACGTTCCATACCCACAGAAAAATCCATTCATTGACGCCACAGCTTCGATTCAGAGATGGAACCAGGTAAAGGATACTTTTGTGATAACGGGACATGGATGGAACCGAAAAAAGTTCGACAGCGGGACCTTCACAAGGAGTTCATGCACAGAGTGCAAAAGAAAAATGGGAGACACCAAATACGATAATCATGAAAACAGACTGATGTTCAGTTTACAACAAATGATGAATTCTGAACATTTCGCAGATGTTGTTATATGCTGCGCCGATGGATACAAATTAAGAGCCCACAAAGTCGTACTAGCTTACTGTAGTTCGTATTTGCAAACACTGTTCCTCGGCCATCCTGGACCGGACGACAGCGTTACAATCATCCTGCAGGACGTCGGGCACGAGGACGTGGGCCGCGTCCTGGAGTTCGTCTACACGGGTGCGGCCGTCGTCCCTGGGCACAAGATGGACGGTTTCGTTACGGCCGCTGGAGCCCTGGGAATCGGGCCGCTTCTGGATCCGAGACGGCACTTGGAAATGTCTTCGGTCCAACCACAGGCTCCCCATTGCCATCCGTGCTCTCCATCAACATATATGAACGATCCGACGCCTTTAACGACGACACCATCGCAGCAGCAGCACCCTTATTGCAGGGTCCGTCAGCCGCCCAGGACCACGGGCATTTTGACACCCTCACCGTGGGCTCAAAATTCCCGTCCACCGTGCGCCACTCCCAGGTACTCGGCTCCAAAGACCGTGCAACCTGACTCCCTAGTGATTCCAGTGCATCCGCCGACGGCGAACACAATTCAGGTTACAGAAATCCAAAGAGGACCGCTTCCTATTCCGTTGCCACCAACACCGCCGGAAGAGCCTACGATTGTTTCAATACCACCGTCACCATCCACCGACAGTGACAGAGACACAAACCAAAAACTTAAAGTTACCAGCGATGCTAACAACAATGGGATCCCGGAGAAAGACCGAAATGCGAATCAAACAAAAAGTCATGTTTGTCAAGAATGTGGGAAAACTTTCGTAACCAAAGCGTCTCTCAAGATCCACCAGAGGACCCACACGGGCGAGAAACCGTTTGTGTGCGAGTCGTGCGGCAAGCAGTTCAGTCAACTGCGCAACTACAAGTACCACAGGTCCGTGCACGAGGGCACCAGAGAGTTCTCGGGCAGTTGCCCGGAGTGCGGTAAGCTGTTCAACGACCGCGGTTACCTGAGCTCGCACATGAAGATCCACCGGAACCGGAAGGAGTACGAGTGCGAGTACTGCACGAAGAGCTTTAACCAGCGGGTGGCGTACAACATGCACGTGCGCATACACACGGGCGAGAAGCCGCACAGTTGCCACCACTGCGGCAAGTCGTTCACCAGGAAGATGTTGCTCAAACAGCACCTGCGCATACACACCGGCGAGAAGCCGTTCTCGTGCGCCGTTTGTCACAAGCCGTTCGCCGACCGTTCCAACATGACGCTGCACATGCGCCTGCACTCGGGCGTCAAGCCCTACGCGTGCGCCGTTTGCGCCAAGTCGTTCACCAAAAAGCATCACTTGAAGACGCACATGAACTACCACACGGGCGTCAAGCCGTACTCGTGCGACAAGTGCGGGCTGAGCTTCAGCCAGAGCAGCAACATGAGGACGCACCTGAAAAAGTGCAGCGCAGTGGCGACGACGACGACGACGACGCCGCCGCCACCGCCGCCGCCGCAGACGGCCGTGGCAGTGGTGCAGGCACCGGCCGCGCAACCGGTCTGA
Protein Sequence: MHYVPYPQKNPFIDATASIQRWNQVKDTFVITGHGWNRKKFDSGTFTRSSCTECKRKMGDTKYDNHENRLMFSLQQMMNSEHFADVVICCADGYKLRAHKVVLAYCSSYLQTLFLGHPGPDDSVTIILQDVGHEDVGRVLEFVYTGAAVVPGHKMDGFVTAAGALGIGPLLDPRRHLEMSSVQPQAPHCHPCSPSTYMNDPTPLTTTPSQQQHPYCRVRQPPRTTGILTPSPWAQNSRPPCATPRYSAPKTVQPDSLVIPVHPPTANTIQVTEIQRGPLPIPLPPTPPEEPTIVSIPPSPSTDSDRDTNQKLKVTSDANNNGIPEKDRNANQTKSHVCQECGKTFVTKASLKIHQRTHTGEKPFVCESCGKQFSQLRNYKYHRSVHEGTREFSGSCPECGKLFNDRGYLSSHMKIHRNRKEYECEYCTKSFNQRVAYNMHVRIHTGEKPHSCHHCGKSFTRKMLLKQHLRIHTGEKPFSCAVCHKPFADRSNMTLHMRLHSGVKPYACAVCAKSFTKKHHLKTHMNYHTGVKPYSCDKCGLSFSQSSNMRTHLKKCSAVATTTTTTPPPPPPPQTAVAVVQAPAAQPV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01038668;
90% Identity: iTF_00973178;
80% Identity: iTF_00135529;