Basic Information

Insect: Aphis glycines
Gene Symbol: -
Assembly: GCA_009928515.1
Location: scaffold:464235-469372[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 7.9e-06 0.00067 20.1 0.4 1 23 107 129 107 129 0.96

2 23 7.5e-05 0.0064 17.0 2.7 2 23 139 161 138 161 0.97

3 23 0.018 1.5 9.5 4.7 1 23 197 219 197 219 0.99

4 23 0.8 68 4.3 0.7 2 23 225 246 224 246 0.92

5 23 0.24 20 6.0 3.5 1 20 251 270 251 272 0.91

6 23 0.096 8.2 7.2 0.9 2 20 294 312 293 318 0.91

7 23 0.00036 0.03 14.9 0.5 1 23 319 341 319 341 0.97

8 23 0.056 4.8 8.0 2.0 1 23 672 694 668 694 0.88

9 23 0.00017 0.015 15.9 1.0 1 23 764 786 764 786 0.96

10 23 0.057 4.9 7.9 3.6 1 23 792 814 792 814 0.97

11 23 0.048 4.1 8.2 10.4 3 23 870 891 869 891 0.96

12 23 0.00013 0.011 16.2 1.1 3 23 934 954 933 954 0.98

13 23 0.0013 0.11 13.1 3.5 1 23 960 982 960 982 0.99

14 23 1.4e-05 0.0012 19.3 1.5 1 23 1024 1046 1024 1046 0.98

15 23 0.0035 0.29 11.8 1.0 1 23 1052 1074 1052 1074 0.97

16 23 0.003 0.26 12.0 0.8 2 21 1106 1125 1105 1126 0.94

17 23 6.1e-05 0.0052 17.3 2.2 1 23 1156 1179 1156 1179 0.97

18 23 4.1e-05 0.0035 17.8 0.1 2 23 1225 1247 1224 1247 0.95

19 23 8.5e-05 0.0073 16.8 4.1 2 23 1255 1277 1254 1277 0.96

20 23 0.0011 0.091 13.4 0.9 1 23 1309 1331 1309 1331 0.97

21 23 0.00028 0.024 15.2 0.2 1 23 1336 1359 1336 1359 0.95

22 23 0.0026 0.22 12.2 0.7 2 23 1391 1412 1391 1412 0.98

23 23 3.7e-05 0.0032 18.0 3.0 1 22 1418 1439 1418 1439 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	7.9e-06	0.00067	20.1	0.4	1	23	107	129	107	129	0.96
2	23	7.5e-05	0.0064	17.0	2.7	2	23	139	161	138	161	0.97
3	23	0.018	1.5	9.5	4.7	1	23	197	219	197	219	0.99
4	23	0.8	68	4.3	0.7	2	23	225	246	224	246	0.92
5	23	0.24	20	6.0	3.5	1	20	251	270	251	272	0.91
6	23	0.096	8.2	7.2	0.9	2	20	294	312	293	318	0.91
7	23	0.00036	0.03	14.9	0.5	1	23	319	341	319	341	0.97
8	23	0.056	4.8	8.0	2.0	1	23	672	694	668	694	0.88
9	23	0.00017	0.015	15.9	1.0	1	23	764	786	764	786	0.96
10	23	0.057	4.9	7.9	3.6	1	23	792	814	792	814	0.97
11	23	0.048	4.1	8.2	10.4	3	23	870	891	869	891	0.96
12	23	0.00013	0.011	16.2	1.1	3	23	934	954	933	954	0.98
13	23	0.0013	0.11	13.1	3.5	1	23	960	982	960	982	0.99
14	23	1.4e-05	0.0012	19.3	1.5	1	23	1024	1046	1024	1046	0.98
15	23	0.0035	0.29	11.8	1.0	1	23	1052	1074	1052	1074	0.97
16	23	0.003	0.26	12.0	0.8	2	21	1106	1125	1105	1126	0.94
17	23	6.1e-05	0.0052	17.3	2.2	1	23	1156	1179	1156	1179	0.97
18	23	4.1e-05	0.0035	17.8	0.1	2	23	1225	1247	1224	1247	0.95
19	23	8.5e-05	0.0073	16.8	4.1	2	23	1255	1277	1254	1277	0.96
20	23	0.0011	0.091	13.4	0.9	1	23	1309	1331	1309	1331	0.97
21	23	0.00028	0.024	15.2	0.2	1	23	1336	1359	1336	1359	0.95
22	23	0.0026	0.22	12.2	0.7	2	23	1391	1412	1391	1412	0.98
23	23	3.7e-05	0.0032	18.0	3.0	1	22	1418	1439	1418	1439	0.96

Sequence Information

Coding Sequence: ATGACTCCAATGAAAGATTACATAAAAGTTGAAGTCACTGGTGATTCTGATGCTGTTACCAGTGAATTATATGTTGAAAACACTATTGAAAATCCTGCATGGTATACAGTTGAAGATAATCATGTATCTTTGGTATCTGAAAATATTGAAAAGGTTATCAAAGTTGAAACCGATATGTTGGATGACTGTATGTGGGAAAGTAGAATTGAAATTTCTAAAGATGTTGCCAACCAAAATAATGCCGAGTTACCCTTGGAATCTCAGAATGTTGCAGTCAATAATATTGACTTAAATCCTGAAAAGACAAGTAATAAAATGTTTTACTGTAATATTTGTGGAAAAAGTTTCGCTTTAAATTATCTTTTAAAAAATCACTTGGCAGAACATAAAAGACGAATAAATATTAAAAACAACAAATGTAAATATTGTGGAAGGCAGTTCAAATTAAAATTTGGTTTGAATAGACACATTCAAAAATTTCATAATGAACACATGAAAAGCCATGAAAATAATGAAGCTAGGATTAATAATATTCCTAATATAAAATTGCGAAAATTAAATGGTGTTTGGAAAAGTAAGACAAATGTATTTAAATGTAACATTTGTTTTCTAAAATGTCATAGTGAAAAAAATTTAGTTGAACATATGGAAACTCATGACAATTGTCTAACAGAGTGTAATGATTGCTTAAAGTGTGTATCAGTTTCTGAATTGGATAATCATATGGAACAATTACATAATAAATGTTTATATAAATGTCAGAAATGTAACCTACAATTTGTAAAACAACAACATTTAAACTGTCATTTAATTCATTGCTTAAAAAGTTTGCCAACTAAATCAAATAAGGTTTGTGGACCATTCAAAGATGGTTCAACAACTTGCTCTGCTTGTGGAATTATATTTAATAATTCTTTGTCATTGAAAAATCATGTAACTATGGGCTGTAAGCATTACACTTGTAAATATTGTGGACAATATTTTAGTTCAAGGATTTTATGGCTAAGACATGTGGATGTTCATGAAAAAGATGAAAAACGTGTAATGTTTAGAGCAAATAAAATATCTACAATTAGAAAATATAATCAAACTGAGGCTGTAAATGATTCTTCTTCTAATACAAGTGAAGGACAATTATTATCCAGAAATGTTACAAGAAGAAATAATTCAGAACAAAACGATTTAATGAACAGCAATTCAACAACTGTATCAACTGCTTCAAATAATTCAATGGCAAATGATTATGTTATTCAAAATATAAAGCAAGAAAAATACTTAAATGCAAATGCCAAAGAAAGAAATACTTCGCATCAAGTGATTAACAATCAATCAACTGTATCTGTTGTTCCTCAAAATTCAATAGCAAACAATTACCTTTTTTTAAATATTAAACAAGAAAAAATCATGAGTACAGATACCGTAGAAACAAATAGCTCAGATCAAATAAATTTAGCAAACAGTAATGAATCAACAATTTCAACTTTTTCACATAACTCAATAGTGAACGATTGCCATGTCTTAAATATTAAGCAAGAAAAAAACACAAGTACAAATGTCATAGAAACAAATAGTTCAGATCAAATAAATTTAGCAAACAATAATGAATCAATAATTTCGACTGTTTCGCAGAACTTAATAGTGAACGATTGCCTTGTCTTAAATATAAAGCAAGAAAAAAACACGAGTTTAAATGTCAAAGGAAGGGAAAATTCTGATCAAATGGACTTAGTGAATGACAATGAATCAACTGTGGAAAACAGACTTCATGATTTAATGGTATATGAAGACCCTATTAATATTAATGTAGCTAATAATTCTGTTTCTAAAATTAGAGAAACACCTTATATCTGTATTAGAAAATTGCCTTATATTAAAAATGTATTTTGCAATGATGTTAATGATCAGACATCACAAAATAATGTTATATTTATATGTAGAATTTGTAAAAAATCTCCGTCTACAGATATACATTCATTCGCATTGCACATGAGTGAACATGTTGAATGCAACATGCACGAATGTATCGTGTGTGATAAGACATTTAGCACTGTACTTCTTTGGACAAACCATATGACTTATCATCAACAGCAATTAGATTTAAATATATCAGCAGTTCAGTGTAATCTTACAGAAATTGAATCTAATACATCAGGCCCAATTGATTCTGGAAATATGGAACCACAAGTTTGTTCAACCTCAAGAAATAGAAAATTCAAGATGTCTTTATTGGATGATTCATATTCAGATATAACCAGCATGAATAATAGTGTCAATAAAGTAAAATATCAATATGACTGTAGCACATGTAAAAAAATATTTCCTTCCAAAGTCAAATTAAAAGCGCATCAAACTCTTCATGCTAAACCACAATCATTTTCATGTAGGTATTGTGATAGAATATTTTCTGGAAAGGGTCAGTGTACAAATCATGAAAAATCTCACATTGGTTTAGACCAAGCGTGTTTTCTAAATAATGAAAATTATACACCTGAAGCAATTTTAATCCAAAACAATATAAGCATAGAAAATAACAACATTAACACGGTGACAACATCAATTAAACATAAAAATAAAAACAAACTATCATCAACTATAAAAACAAATCATTGTCATTTATGTAATAAAAAATTTTCAAAGCGCTGTTATTTTACAAATCATATGCAAATAAAGCATAATATTAATCCAAATTTACCAAAACAACTTATATCAAATTCTGATAATGAAAATAAATTACCAGTTCCGGTAGATAGTGATTTGAATAATCATCTTAATAAGAGTAATGAGAAGAAATCAAAATTTTGTACCATTTGTAATAAATATTTTGCACATATGGGTGCCTTAACCAATCACATGAATATTCATTTAGATCGTAAACCATACAAATGTCAATATTGTTCCAAACAATTTAGTAAGGAAGCCTCTTATATTTTGCATAAGAAAAAACATGTGCCAAAAAATGAAGTTAATGAAGAACCACAAATCGAAAATAGTAATGATTTTGAGTTGGTTTATAATCCAGTTGATGGGAATTCAAATGATGCAAATTTAATTAACATGAAAGATTTATGGTTTACCTGCGATGTATGTGAGAAAAAATTCTCTACTCCATTCCAATTGAATTTACATCGAAAATTACATTCTAATATTGTACCATATGTATGTAAGATTTGTAATAGATCTTATACATTGAAATTTCGATGGAATTGGCATTTAAAAGGCCATTACCTAAGACATATTAAAAGTTTAAAAAGTAAACGAAATACTAATGATATTAAATCAAAGATTGCACCTATACAACATTATCAAGATAGAATAAAATGTCGATATTGTAAAAAAGAATATAACTCAATATCTCAGTGGAAAAAACATATGACAATGAACAAGGAATGTCGTCGCCATTGTAAAAATAACCTTCCAGAATTTGCATCAAATCATGCTTCAAAGAATCGTACCAAATCTTGTCGTTTTAAGTGTAATATTTGTAAGAAAACATATAGCACCTCTTACAATCGTTCAATACATATAAAAAATGTCCACAACGAGTTAGATTCTACAGTTTTAAATAATCATAATAATACTAATTTTCAAAAAGACAAACCAATGGAAATAATTCAACAGAAACCAGTGATTAAAAAACAAAATAGAAGTAATCATATTAATGGCAGTGGCACTAAATGTAAGTTATGTGGCAAAGTATATAGTAGTGTAGCTAATTTAGCCCGCCATGTATCTATAGTTCACACAAAGCGTTATGAACCTATGACCTGTAATGTTTGTGGGAGGACATTCAAACATAAATTTTCTTTTAGAGAACATTTAAAAATTAAACACAAAAAATTGTTTAAAAATTATGAAGAAATTAACGTTAAAAATAAAAGAGCCAACAGGGAAATTATACCAATAAATAAAAAAAGAATTGTGAAATACTTTTGCAAAATTTGTAAAATGAAGTTTGCTGACAATATTACATTACAAGAACATTCAAAGATACATATAGTAGATATGTATAATTGTAAAGACTGTGGTCAGCAATTTGAGACAAATGTTACTCTAGGTAATCATATTATGGAAAACCACAGTGGTGATAATTCTATATCTAATAAAAACAATCATATTAAGAATTATGAGAACCAAAATACTTCTTTGGAAATAATTAATAATAATCCTGCTCAATGTAAAGTTTGTTTGAAAATCTTAAAAGATCCTGGATATTTACATGAACACATGAGATTACATACAGGTGACAAGCCGTTTAAATGTGATCAGTGCAATATGACTTTCAGATTTAAATCAAACTTAAGAATGCATCAGAAGAAAGATATGCCATGTTATATCCCATAA
Protein Sequence: MTPMKDYIKVEVTGDSDAVTSELYVENTIENPAWYTVEDNHVSLVSENIEKVIKVETDMLDDCMWESRIEISKDVANQNNAELPLESQNVAVNNIDLNPEKTSNKMFYCNICGKSFALNYLLKNHLAEHKRRINIKNNKCKYCGRQFKLKFGLNRHIQKFHNEHMKSHENNEARINNIPNIKLRKLNGVWKSKTNVFKCNICFLKCHSEKNLVEHMETHDNCLTECNDCLKCVSVSELDNHMEQLHNKCLYKCQKCNLQFVKQQHLNCHLIHCLKSLPTKSNKVCGPFKDGSTTCSACGIIFNNSLSLKNHVTMGCKHYTCKYCGQYFSSRILWLRHVDVHEKDEKRVMFRANKISTIRKYNQTEAVNDSSSNTSEGQLLSRNVTRRNNSEQNDLMNSNSTTVSTASNNSMANDYVIQNIKQEKYLNANAKERNTSHQVINNQSTVSVVPQNSIANNYLFLNIKQEKIMSTDTVETNSSDQINLANSNESTISTFSHNSIVNDCHVLNIKQEKNTSTNVIETNSSDQINLANNNESIISTVSQNLIVNDCLVLNIKQEKNTSLNVKGRENSDQMDLVNDNESTVENRLHDLMVYEDPININVANNSVSKIRETPYICIRKLPYIKNVFCNDVNDQTSQNNVIFICRICKKSPSTDIHSFALHMSEHVECNMHECIVCDKTFSTVLLWTNHMTYHQQQLDLNISAVQCNLTEIESNTSGPIDSGNMEPQVCSTSRNRKFKMSLLDDSYSDITSMNNSVNKVKYQYDCSTCKKIFPSKVKLKAHQTLHAKPQSFSCRYCDRIFSGKGQCTNHEKSHIGLDQACFLNNENYTPEAILIQNNISIENNNINTVTTSIKHKNKNKLSSTIKTNHCHLCNKKFSKRCYFTNHMQIKHNINPNLPKQLISNSDNENKLPVPVDSDLNNHLNKSNEKKSKFCTICNKYFAHMGALTNHMNIHLDRKPYKCQYCSKQFSKEASYILHKKKHVPKNEVNEEPQIENSNDFELVYNPVDGNSNDANLINMKDLWFTCDVCEKKFSTPFQLNLHRKLHSNIVPYVCKICNRSYTLKFRWNWHLKGHYLRHIKSLKSKRNTNDIKSKIAPIQHYQDRIKCRYCKKEYNSISQWKKHMTMNKECRRHCKNNLPEFASNHASKNRTKSCRFKCNICKKTYSTSYNRSIHIKNVHNELDSTVLNNHNNTNFQKDKPMEIIQQKPVIKKQNRSNHINGSGTKCKLCGKVYSSVANLARHVSIVHTKRYEPMTCNVCGRTFKHKFSFREHLKIKHKKLFKNYEEINVKNKRANREIIPINKKRIVKYFCKICKMKFADNITLQEHSKIHIVDMYNCKDCGQQFETNVTLGNHIMENHSGDNSISNKNNHIKNYENQNTSLEIINNNPAQCKVCLKILKDPGYLHEHMRLHTGDKPFKCDQCNMTFRFKSNLRMHQKKDMPCYIP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00136312;
90% Identity: iTF_00136312;
80% Identity: -