Agly006896.1
Basic Information
- Insect
- Aphis glycines
- Gene Symbol
- -
- Assembly
- GCA_009928515.1
- Location
- scaffold:1426236-1426646[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.4e-08 8.1e-05 22.4 0.1 7 40 21 54 15 57 0.87 2 2 6.3 6.1e+03 -2.8 0.1 30 36 80 86 80 87 0.80
Sequence Information
- Coding Sequence
- ATGGTCAGAAACTATATAAAAAAAACAAACCGTGGTACAGTATCTGAAGATATTTATAAAAATGCTGCTGCTGAAGTGTTATCAAAAGTAAGTTCACTAAGAAATGCTGCAGAAAAATATGAAATAAACTTTATGACTCTTCAAAGATATATAAAGAGACAATCAAATTTACCACTAAAACCAAATTGTAAACTGGTAGACTATGCAAAATACAAACAAATCTTTTTAGATGAGTTAAAATCTACTTTATCTAATTACTTGGTACATTGTAGCAGAATTTATTATGGTTTTACACTATCAGATGTTAAGGTATTGGCATATGAATATGCAAAATCAAATAATGTTGCATATCCCAAAGGGTGGAATGTACACAAAACAGCTTCTAAAGACTGGTTTACTAGTTTTTTTTAA
- Protein Sequence
- MVRNYIKKTNRGTVSEDIYKNAAAEVLSKVSSLRNAAEKYEINFMTLQRYIKRQSNLPLKPNCKLVDYAKYKQIFLDELKSTLSNYLVHCSRIYYGFTLSDVKVLAYEYAKSNNVAYPKGWNVHKTASKDWFTSFF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -