Agly000717.1
Basic Information
- Insect
- Aphis glycines
- Gene Symbol
- -
- Assembly
- GCA_009928515.1
- Location
- scaffold:834194-838961[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-06 0.0018 18.1 0.0 12 40 79 108 70 110 0.76 2 2 0.0001 0.1 12.5 0.0 2 40 124 163 123 166 0.92
Sequence Information
- Coding Sequence
- ATGGATTACTTTCATAAAAATTGGTATGCTATTAGGAATGAGTGGGTGGTAAGCATGACTAATGACAGTGAATGTCTCGGAATAGAACGAAATAGTAAAGAACTAGTTATACCTAGTTCAAAAATGGTCAACAGCCAAGTTTTCAAATGCTGTGTAGAAGAACAATCATCATGGCCAAGTACCCATATAGCAGGCTGAATGTCGTTTCAAGATATGGAAAACGCACTGTCTTTTCTACGGAAAGGCAGCGGTTTCATAGCTCAGGCATCCAGGGAATACGGAATTCCGGAGACGTCGCTGCGTACGCATGCCGTCCGTGAGGGGATCGTTCCTAAAGCCGCTAAACGAGGTTATGTAAAGACCACCATCAACGACAATCTGCACGAGGCCGTAGCGTTGGTGCTCAACAAAGGGTATCCGGTAAACGCGGCTAGCCGTGAGAAGAAAGTGGCAAGGACAACGCTCCGAAAGAAGCTAAAAAGGGTAAAAGACATGCAGGAAGTCGCCGTCGTGCCGCCTAAGAAAAAGAAGAAGAAATCTCTAAAGAAATCGCCGTCACCAGACATATCGGCCGTAAAGACGACCGCTGTGAAAATCCACCAGATACGCCTCTCCGACCAGCTACCAGCATCGTCGCGATCAGCGTCGCCACCACTTGTGTCCCCGTCACCAGCGTCGCCGCTATCAGTGACCCCGCCAGCTGTGCCACCGCAAACTGTCTCGCCAGTGTTGATGAACAAGTTGTTTTCACACTCAAAAAACTGCACCGCTGTCGAATTCGCCCCTGTGTCACCTTACTCGCTGCGGGTGAAGGAGTGGGTCGGGTCGTTGCCCAATCCGAACCCGTTTGCCTTCAGTAGCGACGGCGAAGAACGGTTACCGGTGCGGTTGACGCAGAAGTCACTAGTCCCGATGCCGGCCAGTTCTCCGGTTGACTCGGTAGAGGTACCTATGGCATCACCACTCCACCATTCAGACAGCGATTCTTCGGGAGAGATATGCAAAGGCAAGCGCCGTCTCACCGTTAATGAGAAACGGGTGTTGTCAATGGATACAAGGATGGTCAAATATTGTCCGTTTTGTCCGTAA
- Protein Sequence
- MDYFHKNWYAIRNEWVVSMTNDSECLGIERNSKELVIPSSKMVNSQVFKCCVEEQSSWPSTHIAG*MSFQDMENALSFLRKGSGFIAQASREYGIPETSLRTHAVREGIVPKAAKRGYVKTTINDNLHEAVALVLNKGYPVNAASREKKVARTTLRKKLKRVKDMQEVAVVPPKKKKKKSLKKSPSPDISAVKTTAVKIHQIRLSDQLPASSRSASPPLVSPSPASPLSVTPPAVPPQTVSPVLMNKLFSHSKNCTAVEFAPVSPYSLRVKEWVGSLPNPNPFAFSSDGEERLPVRLTQKSLVPMPASSPVDSVEVPMASPLHHSDSDSSGEICKGKRRLTVNEKRVLSMDTRMVKYCPFCP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -