Basic Information

Gene Symbol
ARFGEF3
Assembly
GCA_009835225.1
Location
VUJU01001588.1:2508-22008[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 8.9 1e+03 1.2 0.3 6 21 1945 1960 1941 1961 0.85
2 10 0.065 7.3 8.0 0.2 2 20 1967 1985 1966 1987 0.93
3 10 0.00079 0.089 14.0 0.6 1 23 2349 2371 2349 2371 0.97
4 10 2.3 2.5e+02 3.1 5.9 1 23 2407 2429 2407 2429 0.94
5 10 0.0015 0.17 13.1 0.7 2 23 2440 2461 2439 2461 0.96
6 10 0.013 1.4 10.2 1.0 1 23 2472 2494 2472 2494 0.97
7 10 3.8e-06 0.00043 21.3 1.1 1 23 2500 2522 2500 2522 0.97
8 10 0.083 9.3 7.7 1.5 1 23 2528 2552 2528 2552 0.94
9 10 0.013 1.4 10.2 1.8 1 23 2558 2580 2558 2580 0.97
10 10 0.00063 0.071 14.3 6.8 1 23 2584 2606 2584 2606 0.98

Sequence Information

Coding Sequence
TCAATCGACATGGAAGATCTACTAATTCAAATATCAAAGGACGCAGCAAATGCAAAATTAACCAGCCTGAGTCAGTCAGCAACTGAAGCATATGTGTTTTTAGAGAAACAACAGGGAACTTTGCGTGATCCAGCTCATGAACTTAGAGCAaagtgtttaaatgtttttaaactggCTTTTGAAACCAGAAAAAGCAAATTAGTGGCACAAGCTTTATGtggattaaatAAAATATTGAGAGATGATCGTTTTCAATCTAATTTTGAGCCAGAAGATGATTCATTATGGTTGCCATCACAGATTTTGCATACAATTAGTTCTATTTTAACGCAGTCAGATGACACTCAAATAGATATGTTAAAGgtgtttttaaatgttgcgTGTTCTTCATACTGGACAATGAATgggcgtattataatacaaatacttacAGTATCCTGTGAAGTATATGAAAATGGAAACCAAGGAATTCGATCTGCTGCACAAGCTGCTGTCAGTCAGACACTACgatatttttgcaattttctcgATGAAGAATGTGaagaaatgaataaaatgaaagACAATGGGGCTGGTGGAGTATTGTGTTTTAATGAAGCATTaccaattttacaatttattgttagtAAAATAGATGAGactcaaaaTGGAGACCGTTGCAGTCAAGCTGTTGTATTTTATCTTGAATGTCTTCACACTCTTGTTGCAAGTTTACCTCAAAAAGTACATGATAATCGTCACTTTACTATGTTCTTATGGCAACGGCTATGTCCAGCTATTATAGCCTTTTTAGGATCACCTcgagtagataaaaaaatagtatcacGAGATGATGACAATGTCACCAAATTTGGTAGAGGGTCTGGTGTCTTAGGAAGTGCTCCTAGCTTCAATAGCAatcaatctaaaataatatatagtattggaAGTCAACTAGTGAGACTGGTTGGATGTGTGAGTTCTCTGAGACCTGTTTTGGAGTCTGTCTTTCATAGAATGCTTTTGTATCCACCGCCTCTCTATAGAATAGATGCTTTAAAAGCCTTAAAAGAGcTATTAAGTAGTCCAAATAGAATAGTGGATTTTGCTGGACCAATACTTGTGGAAGATGATAAAATGTGTCAACAGAGTGATATGGCATTGACTCGtttAGTAATGGATTCTATTGAAGAATGTTCTAAATGTACGGATTGGGAAATAGTTTTTACTAGTGTTTCATGTATACTTTCTCTACTTTCAACTCTTCTTGAATTGTCTACTGGAAAAGGGATTAATGATGTGTACActgacaaaataaatgaaaaatttcagTCTTTAGCTAGTTGCGACTACACGGGACCTTTAGCTTATGAATCAATGAAGAgattaccaaatatttatagagaaCAAATATCTTCTTCTTCCGAGTCATCTATTGGAAATCGAAGTCGTATTAACAGTACAAGCAGTAGTAGTGGAGTTCCAAGTAGTGGTAATACAGAAGGTCCTGAAGGAGGATATCAAAATGATCCTCAgATTGATGAAATGGAAGCAGCGGTTGAGAAAAACCTAAGAGAAGAAGCATTTCATTTAGAATTAGTAACAAAAAAGTTGAATACTTGTAATGTGTTTCAAGTTACTCCTgaGTCTGTAGAAATGTTGGATTTGGAAAGAAAAAATGCTGGTAGTTTTGTCCAGACTCTGGTTAGTTTTTTACCTACATTGCTACCACTTCGAAGTACATTGCAAGTAGATGAAGAGATCCAGAGATTTTCTTCTAGTTTTTGCGAAGaaattatacgacaagattataaaaaaaatggttcaataataataaatgctgATGGTGTTTATGTAGCAACAATAATGTCACTATATGTTAATCTAAAGttgataaatcaaaattattatgatgattctTCTATACTGCCCATCATGTCTGAAGATCAATTTGTTGAAGACATTTTTAGCAGTGGCATGCTGATGTATGTTTCTAGAAGTTGGTTAGCTGAGCTCTATCAACATGTACTCGTTactaatattttggtattatcCGGTTACAAGACTCAAGCAACTGGTCATTTGGCgctaatagatatattaacaGatattgatGGCTACAATTCTGAAAATAAAGTCAATTGGTTATTATCAGATTGTCTTCGTCTAGAAAGAACTGTCTGTAGATCAGAAACAAGTCCTGATGCTGATGCGGgtacaaaaTTAAGTAGGCGAATCGTTACATGTTGCTGGGATACAATGATGAATGTTTTGGCTGTTCCTCTTGAATTTGATTCGTCCaatgattcaaaaaataatcaggttaaaaaaatgttacgaaATGAACTAAACAAAGATTCTATTCGTCAGATGTCAGTTCAACATAGTCTAGATGCCTTACAAAAAGCTGCTACTCTTGCAAATATTTTAGGCATGCATAATCGCTGTGAAGGTATATTCGCTCTGCTTGTAAAAGCTTCTTGTGCTCAGAATGGAAACGTGAATTGGTTTTCAGGCATAATTAAAAAGCAACCAAAGTTAATAACATCACATGTTTTGAGTATGGATGTAATGCTCTCACGTGGCTTAGAATTTGGATGTCATGGACAAGAATGTTGgccacatatttttaaCTGTGCACTATATGTTGGATATCTTGAACAAGTATTTTTTAGACAGACCTGTTCATCAGTCTCTGCTTTAAAGATGGTTAAACCCAAGTTATCAAATAGCAAtactgaaaatttaaacaaaagtttTGGTACATCTATAGATAGTGATGAAGAAGTTTGcatGGATGTCTATAGTTTTTTGTCTTCACCAACTTCTCCTAATAATTTGACAGAAACCATATCAACTTTGGTAAACAAAAGTAGAGCAGATATTGAAAACAATGGTATATTGAACCAAGAGTATGCTGCACAAATAGTCTGTATTCTGTCTCAATATGTTGATCGattGTTTGAAGACGCCGCATTAAAATTGAACCTGAGAGCGCTTTCTGAATTTGTACGTAGCTTATGTGAAACTATTCGACATGAGTTGTTTAAACCACTAGATCAGAAGAAATCTAACAGTACTAACAATGTCACTCTTTTAACACGATTATCTCGACTTATGTTACGATGCATCAAAAGTGGGCGCCCATTGTTTcacatgataaaaatatggtcAATTGTTTTGCCATGTCTGATGGAAgTATCATGCCATAAAGATTTGACATTGTCTAAACAAGCTATAGCTTCGATTCATGATACAGTTTTAGCATTCCTTAACGACCAACCAGAACTTTCTCATTTTCATATCAATGAATCACTGTTTAAGCCTTTTGAAAATCTTTTATGTTTAGAATTATGTGATATAGAAATTCAAGaccaaatTGTCAGTTGCTTATGTGAATTTGTTGAAGCTAACCGTTCAGATATCAGATCAGGTTGGAGACCTTTATTTGGTGCTCTAAAAGTAGTCAATAGCAGTCATTTATCATCTCTGTTAgaggtatttaaagtttttttgaatACTGATGACACATTAGCTTTCTCAAATGCAGCTGTTGATTGTATAGCTTGTCTTATTAAACACGTACGAGGAACTAaTTTTGACAACTCTGATACTAATACTAGACTAGAACTGTGCAAAGCTGCTCTTAAACATTTACAACATTGcagtttaatattaagatCAATGTATGTTATGCCAGCTTGTCCAAAATTTCATTTACCTAAAcgaaaccaTGTCTTCACTTTGGTTGACAACGATGTGCctgaattacaaaatattcaaaatgaaaactataatCAACTAGCTATTGAAGATTCAAAAAATGAAGCTATGCTTTTAGAAGAAATAGATCAACCCTGTGGTATACTGAGAGTATGGTACTGTATTGTAGAAGGACTTTGTACTGCAATTACTGGTACAACAGCTATATATCAAAGGCAAAGTCTTGAATTGCTTTTAGACATATTACAGGAATTTCCTGAAACACcaggaTATATATTTGGTTGTTTCTGCATAAATCGATTACTTCTTCCTACCATACAAACGTGGGCAAGAAAGATTGTGTCAACACATGACCTTAGTGACTTACAAAATTTCAAACAGTTGTGTGGAAATTCAACTGATCTTATTGTCAATTACCTTAAAATGGATAACAATTatgaattgaaatttgaaaaagaaataacaCTTATGATGAAAcaacttttatttgttttaaatgaattcTGTGTTCAACCCTTAGAAAACATTGTACGCTTAGGATGTGCATGTTTGAGACATTTTGTTTTGGGTGCTGGAGATAACTTCACTACAAACCAATGGGATCTAGTCAGCTCTAGTTTACACAGAGCTTGTGCTGTTTCTCTATATCCATTGACCAGAGTATCAATGACATACAGTCCATTTTCAGATAGTTTTTATGGTGATTTAGCAGCTGGTATTAAAGTTGCGGCGAGAAGAGATAGTACAATAGATGACAATttgcatttaaaacaattatcacAACAGGTGTTTTTGTTAGATCATCAAAGAGTTAAAAGTGACACAATTGTTGATGATGAaagaagttttatatttttattatgccaTCACTGGTGTAATTTAGAAATTGACAACCAATGGCAGAAATCACCAGAACGTGTTCCTTACAAGAATATAGTACTTGGGTTGTTTGTAAATGAAATGCTATTACAAATGATTGGAAATGTGTTAGTAAAGGGTACCAACAAAGCTATtcctagCTTAGCCAATATTCTTCTCCAGTCTTCTTTAATGACACCAATGGATGAACAATCGTTTAAATCTCACAAACAACATATGCCTGGATATTTGTCCTCACTCACCGAATGTCAgattcatacatttatatcgtGTTTGAATATGACATATGATATATCATGGGAATTTGATTCAAGGCCTGGTTTAAAATTTCTCATTCAAAAAGTTGCTGGTTTAGAAAAAGCAGCTAATTTATATAAGCAGGCTGGAGGAGCTTGGACGCTCTCATTGGTTGcactttttgaaatatgtatCAATCGTACATCACAGTTGAATTCTGATCAGATTaaacatattgttaaaaaaaattctcctACTAATGATACTGAAAGTTTTATTCTTGAACTCAAACGTATATTTGATGATGCCTgtcaaaaatatgttgaaataGTTATGGACAAAAGTGGTACACATTGCGCTATTGATAGGGCAGGAGATAAACCCGTGTTCTTTTTTGTTGCACAAAATGATGATATTTTCGAAACTACTGAAAAATCGGCtgcttttaaatttgaagattttaaaaagatttatcCAAATGCACCATTAACATCAAAAAGTGAAGATAGTGGAAGTGATGATGACGATGATGCTGTATATGCAATAGCAAGttgtaaaaatttagataatttaattgaagaatataaaaaaagaaaacatgcTAATTCTATGCCAGGACAACCTGattctattgaaaaaaatgaagaaaatttACCAGCAGAAATCGAAGAACAAAGGCAAACCAGTATGAataaggACAGTGAAGTGCACGAGTCAGTTTGGTCTGAAATGTTAATCTCAGTTTTCGATTTATTGGCACAATTAGATGATGACtcgtttaagttattattaccaGTTTTATTCAATGGAGTAAGAGTTTTGACAGAATCTGCTACTAGGCCTCTGTTGAAACACATTCTCGGGGAATTTTACCAAAGGGTAGCTTTTATTTACGGATTTGGttcataCATCAGTTCCGGGTCATTGGCAAGTTATACGTCCGAACTTCTTAAACACGAAGAAGGTTACCCACACAGTAAGGTTTTCATGGAGAGCGTTGCGTGTCCACTTTGCTGCGAGGACAAGTTTTCCAATCAAGACTTAttgaaatatcatttattaagtttaactaCAAATATTCAGTGCCCTTTCTGTGGAAAACAGTGTGATGATATTACTTCATTGGTCGCGCATTTGGATAAAATTTGCACAGATAAGGAAGATGAAGCTGAGAAATCTATGCAGGATAACAATGAAATGATCGTCGTATACCCAGATGGCAAGTCAAatgaCGAACCAGAACCACATAATGAAGTTGGAGGTTTTGATAATCTTGTGGGAGAAGAAGATTACCAAAATGATGAACGGCAAATTGATACTGATACTGAAACTGGAGTTAAGAAATTTATTGAAGAATTTACAATTGATGATCCGACGAAAACATTGCGACCATCAGACTTAATAGAAACAGAAATTATCGAAGAACCACATCTTTATCACTGTTctgaatgtaatataaattttccatCAATTCAGgagcatataaataaatgtcacAAAGATCAAGAAGTTGTGTTTCAGgtaagtgaaaatgaaaatctcAATAATGCATTAAAAGACATTCCGGGTACCATTAGCGAACAAAATCCTGAGATGGGAAATTGGATTAAATGGGGAAATggctatttttttacaaaccatAAAGATGTGGCAATGAAACAtttggttaatattaaatcagaaATAAAAGATGaagatacaaaaattaaaagtgaagtatatcaaaataacaCAAGCAAGTTTTCTTCTAATGTTTATTCAAATCATTGCATCACGGATTCATATGGTGATCGGTATTTTGATGTTCCCGTTTATTTACTTCATCAAGTAGCTGTAGCTGATAAAGTTAATGATTATTTCCAAGTTGAAGCCCGAAAATTAAGTTTCAAGAAACGAATCCGAGTTGTGcgattaaaatctaatattaatcaatttgaTATTGagcaaatattatttcaaaataaaccaactaattgcaatattattccaatattagaaaaatcatCTGAATGTAATGAATACTCTCAATTAGAAAACttagaaaattgtttattgttaacttGGAAGTGTATagcatgtaatataaaatctgaCCATTGGTCCAAGTTAAACAAACATAACTGTATAGAAGATGATGCCATGAcatctaaatctaaaaaaaatgttgataacaaAAATCCAGCCATTCGAAATAATAGTCGCACAGTTCCTAATGTCCGATCAAAACATATTTGTCCACATTGTGGTGGAGAATTTGATTCAGAAGGTTATTTAAGAACACATCTTATGGTACATATAAATGATTCAAATAAATGTCCATTTTGTGATCAACCAGTAGCACCTGAAATGATGGACACACATTTAATTGCTCATCAAAATCCTGAATTTTCTAATCTAAAGTTTTTATGCAAtatatgtaataaatgttatgattCGGAATTTCGTCTACGATGTCATCAAAGAGCACATGAAATGCGACGTAAACCACGTGAAATATTAGTTTGTGATGTTTGCAATGCTcagtttaatgataaaaactcTTTGAAACATCATGCCATAACACATATTGAACCTCCTGAACGTTTACGCCGATTACACGAATGTCGTTTTTGTGGAAAGACTTTTGTTAAACCTATTGAGAaagtaaatcATGAAAGAGTGCATACTGGTGAAAAACCTTTTGCCTGTCCAGTATGTGGTCGTTGTTTCAGACTTAAAGATCTCGTACAGAAACATATGCGTGTACATACCAAAGAACGCCCTTACAAATGCCGCCATGATGGTTGTGACAAAACATTCAGTGCATCAAGCAGTAGAGTAAATCATGAACAAGGCCATTCCGGTATCAagcaatttaaatgtttttattgtcctagatattttaaaaattggGTGTCGAGAAGTAACCATGTCCAAGAGCATATGGTACAGCACAAATGTGACATTTGTGATCGTTCTTTTGtatcattttgtaattataagaaacatttgaaaatgcaTGCAGAGGGACGACTCAAATTTAGTTGCATACTATGCCGTCAAGCATTTGGAAGACAACTGTTTTTAGATAATCATCTAAGTAAAGAACATGAGATGAAATCAAATAAAGAAGAAGACAtaactgaataa
Protein Sequence
SIDMEDLLIQISKDAANAKLTSLSQSATEAYVFLEKQQGTLRDPAHELRAKCLNVFKLAFETRKSKLVAQALCGLNKILRDDRFQSNFEPEDDSLWLPSQILHTISSILTQSDDTQIDMLKVFLNVACSSYWTMNGRIIIQILTVSCEVYENGNQGIRSAAQAAVSQTLRYFCNFLDEECEEMNKMKDNGAGGVLCFNEALPILQFIVSKIDETQNGDRCSQAVVFYLECLHTLVASLPQKVHDNRHFTMFLWQRLCPAIIAFLGSPRVDKKIVSRDDDNVTKFGRGSGVLGSAPSFNSNQSKIIYSIGSQLVRLVGCVSSLRPVLESVFHRMLLYPPPLYRIDALKALKELLSSPNRIVDFAGPILVEDDKMCQQSDMALTRLVMDSIEECSKCTDWEIVFTSVSCILSLLSTLLELSTGKGINDVYTDKINEKFQSLASCDYTGPLAYESMKRLPNIYREQISSSSESSIGNRSRINSTSSSSGVPSSGNTEGPEGGYQNDPQIDEMEAAVEKNLREEAFHLELVTKKLNTCNVFQVTPESVEMLDLERKNAGSFVQTLVSFLPTLLPLRSTLQVDEEIQRFSSSFCEEIIRQDYKKNGSIIINADGVYVATIMSLYVNLKLINQNYYDDSSILPIMSEDQFVEDIFSSGMLMYVSRSWLAELYQHVLVTNILVLSGYKTQATGHLALIDILTDIDGYNSENKVNWLLSDCLRLERTVCRSETSPDADAGTKLSRRIVTCCWDTMMNVLAVPLEFDSSNDSKNNQVKKMLRNELNKDSIRQMSVQHSLDALQKAATLANILGMHNRCEGIFALLVKASCAQNGNVNWFSGIIKKQPKLITSHVLSMDVMLSRGLEFGCHGQECWPHIFNCALYVGYLEQVFFRQTCSSVSALKMVKPKLSNSNTENLNKSFGTSIDSDEEVCMDVYSFLSSPTSPNNLTETISTLVNKSRADIENNGILNQEYAAQIVCILSQYVDRLFEDAALKLNLRALSEFVRSLCETIRHELFKPLDQKKSNSTNNVTLLTRLSRLMLRCIKSGRPLFHMIKIWSIVLPCLMEVSCHKDLTLSKQAIASIHDTVLAFLNDQPELSHFHINESLFKPFENLLCLELCDIEIQDQIVSCLCEFVEANRSDIRSGWRPLFGALKVVNSSHLSSLLEVFKVFLNTDDTLAFSNAAVDCIACLIKHVRGTNFDNSDTNTRLELCKAALKHLQHCSLILRSMYVMPACPKFHLPKRNHVFTLVDNDVPELQNIQNENYNQLAIEDSKNEAMLLEEIDQPCGILRVWYCIVEGLCTAITGTTAIYQRQSLELLLDILQEFPETPGYIFGCFCINRLLLPTIQTWARKIVSTHDLSDLQNFKQLCGNSTDLIVNYLKMDNNYELKFEKEITLMMKQLLFVLNEFCVQPLENIVRLGCACLRHFVLGAGDNFTTNQWDLVSSSLHRACAVSLYPLTRVSMTYSPFSDSFYGDLAAGIKVAARRDSTIDDNLHLKQLSQQVFLLDHQRVKSDTIVDDERSFIFLLCHHWCNLEIDNQWQKSPERVPYKNIVLGLFVNEMLLQMIGNVLVKGTNKAIPSLANILLQSSLMTPMDEQSFKSHKQHMPGYLSSLTECQIHTFISCLNMTYDISWEFDSRPGLKFLIQKVAGLEKAANLYKQAGGAWTLSLVALFEICINRTSQLNSDQIKHIVKKNSPTNDTESFILELKRIFDDACQKYVEIVMDKSGTHCAIDRAGDKPVFFFVAQNDDIFETTEKSAAFKFEDFKKIYPNAPLTSKSEDSGSDDDDDAVYAIASCKNLDNLIEEYKKRKHANSMPGQPDSIEKNEENLPAEIEEQRQTSMNKDSEVHESVWSEMLISVFDLLAQLDDDSFKLLLPVLFNGVRVLTESATRPLLKHILGEFYQRVAFIYGFGSYISSGSLASYTSELLKHEEGYPHSKVFMESVACPLCCEDKFSNQDLLKYHLLSLTTNIQCPFCGKQCDDITSLVAHLDKICTDKEDEAEKSMQDNNEMIVVYPDGKSNDEPEPHNEVGGFDNLVGEEDYQNDERQIDTDTETGVKKFIEEFTIDDPTKTLRPSDLIETEIIEEPHLYHCSECNINFPSIQEHINKCHKDQEVVFQVSENENLNNALKDIPGTISEQNPEMGNWIKWGNGYFFTNHKDVAMKHLVNIKSEIKDEDTKIKSEVYQNNTSKFSSNVYSNHCITDSYGDRYFDVPVYLLHQVAVADKVNDYFQVEARKLSFKKRIRVVRLKSNINQFDIEQILFQNKPTNCNIIPILEKSSECNEYSQLENLENCLLLTWKCIACNIKSDHWSKLNKHNCIEDDAMTSKSKKNVDNKNPAIRNNSRTVPNVRSKHICPHCGGEFDSEGYLRTHLMVHINDSNKCPFCDQPVAPEMMDTHLIAHQNPEFSNLKFLCNICNKCYDSEFRLRCHQRAHEMRRKPREILVCDVCNAQFNDKNSLKHHAITHIEPPERLRRLHECRFCGKTFVKPIEKVNHERVHTGEKPFACPVCGRCFRLKDLVQKHMRVHTKERPYKCRHDGCDKTFSASSSRVNHEQGHSGIKQFKCFYCPRYFKNWVSRSNHVQEHMVQHKCDICDRSFVSFCNYKKHLKMHAEGRLKFSCILCRQAFGRQLFLDNHLSKEHEMKSNKEEDITE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00135733;
90% Identity
iTF_00135733;
80% Identity
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