Acrc002451.1
Basic Information
- Insect
- Aphis craccivora
- Gene Symbol
- set-4
- Assembly
- GCA_009835225.1
- Location
- VUJU01007547.1:469-6925[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00038 0.043 15.0 3.8 1 23 291 313 291 313 0.97 2 9 6.4e-06 0.00071 20.6 2.5 3 23 320 340 319 340 0.97 3 9 8.3e-05 0.0093 17.1 1.9 1 23 348 371 348 371 0.98 4 9 0.0055 0.62 11.3 1.1 1 23 377 400 377 400 0.95 5 9 0.89 1e+02 4.4 2.0 1 23 791 815 791 815 0.97 6 9 4.6e-07 5.2e-05 24.2 2.0 1 23 819 841 819 841 0.98 7 9 0.0013 0.15 13.3 3.4 1 23 848 871 848 871 0.98 8 9 0.00016 0.018 16.2 4.8 1 23 877 900 877 900 0.96 9 9 0.0022 0.25 12.6 2.4 1 23 906 929 906 929 0.96
Sequence Information
- Coding Sequence
- atggCTCCAAGAATCCAGAAGTCTCGTATATTGGCGCTGGCCGACGATTTATGTACAGCGGCGACAGTCGACAAACAtcttgGGTTCAGACAATTTCAAACGtatattcatggagtcgttattattataatatatctgGAAGgGTTCAAAACACATAAGACACATGTGGaacaatatgaatttaaaacattacgggaaaaaaaattatataagaatcAGATGGAGATGTACATAAAATCCATTAACGACAAAACTTATATGTACACCAAAaacaacagttttaaaaatcaaataaatgatGTCAAAATTGTAGCTACAAGAAATATTCCAAGTGGAATACTCATTAAAACACTAAGTGGCCAAACAGCCATAATAAAATCTGAAGACATTAAAAAGGGTGTTAACGACTTTTCAATAATGAGTAGTTCAAGGAACGGGAaagatttattgtttttgggaCCTGCAGCCTACGTTAACCATTCCTGCACGCCAAATACCAATTGGCAACTTACTGGGGAATCATTATGGACTGCAAAGACAATagcaaatataaaatcagGAGAAGAAATTACAGCTGATTACGGGACTGATTTTTTTGGCATAAACAATATTGACTGCGAATGCGAGTACTGTAAACAAACCAAAAAATtaaaGCCTGTGGATGAACAAGATAAACCTGAAGACCAGACATCACTTGCAATAGCTGCAGTCGAATCAGCTGTGACACAAGtagAGCCTATGGATGAACAAGATAAACCTGAAGACCAGACATCACTTGCAATAGCTGCAGTCGAATCAGCTATGACACAAGtagAGAGTGAACATTCCTCCCATACTGACACTGACACAGAAGATAtAGCAGTAACCGCatatgattgtaatttttgtgaaaaaaaatttaaaaacaaacgatGGTACCAACATCATTTGGCTGTTcatgaagaaaatatattattatgtaacatttgccaaaaaaaattttcatccAAGAGTTCACTTAAACGCCACACATTACTTCATAAACCAGAATTAAGAAAACACTACACATGTGCTATATGCGAAAAAGAATTTTTCCAACAAAGCGATCTAAATTACCACTTCAAAACGAAGCATTGTTCCGAAACCATGTTCCAATGCTCTAAATGTCCAAATAAATATTCctctattaaacaattaaaaatacacgaaaactatgtacatttaaatttggaaaaatatgcatgtaaagattaCATCgtcaaaaagTATTTTGCAACTGGTGATTCTTATTCAACAATAGGCCATAGTTTTCGTGTCGGTTTCTCTACTGTGAGTAAAATAGTTGTGGAAGTTAGTGaagctattataaaaatattgggtCCAATGTTTTTACCAGAACCTACCACTGCAGTTTGGAAAGAATCAGCTAAGgggttttatgaaaaatggcAATTTTCTAACTGCATAGGAAGTGTTGACGGGAAACACGTAACAATTAAATGCCCAAACAACAGTGGAACACgaaattattgttacttaaaaaagttttcactTGTTTTAATGGCAGTAGTTGATCCAGActacaaatttatttgtatcgaTGTTGGTCGCTACGGCCGAAATTCAGATGGTGGAATTTTAGAAGAATCTGTAATGGGTAAGCGTCTGGAAGCTGGGACATTAAATGTTCCAAAACCTGTACCATTACCTGGACAAATAGAAGACACACCCATGGTTCTAATTGGTGATGAAGCATTtgcattaaaaacatatttaatgaaacCATTTCCACGTAGGCAATCCAGAAGTAATACGAGATtggatacttataaatatagattatgtaGAGCGAGACGAGTAGTTGAAAACGCATTTGGCATATTATCCAAAAAATGTCGAGTTTACAAAGGACCTATCGAACTTAAAGAAGAAACGACTATTAAAGTTATACTAGCAACCTGCATTTTGCACAATTATTTACGTGTAAAAATACagCTAGATGAGGATCAATCGGTAATTGGAGCTTTAGAGGAAGTTGATGTTAACAATAGGAGAGGAACAAATGAAGCATTGCAAGTACtaGAGAATATGGGTAATCAAGATCAACAAGAAGACCAAACATCAGTTGCAATGATCTCAATCAAATCTCCTGTGACACaagTAGAGAGTATGGGTAAACAAGATCAACAAAAAGACCAAACATCAGTCGCAATCGTCTCAATCAAATCTCCTGTGACACAAGtgGTAAATACAGATGTTGTTAAGACCAAACAAAAGCCCAATTTCATATTGCCTTTACAGTTTGATGACGATGAAGAATACTTTTCATCccgttgtatttttaaaaaaaaaaaaattttaaattgtgaATACAGTAATACACCTATTACATATAAGTGCACGTATCCCGGGTGTGAAAGAATTTTTCAAAAGCAAATCTGGTGCACTAAGCATTTAGATACCCATTTCACAAAGCATGTTTGTCCTACATGTGGAAAAACTCTTTCTAGCAAAAGTACATTAAATCGGCACTTACAAACGCAtgtagaaaatagaaaaacctTTAAATGTCTTACATGCAAACAAAGTTTCTTTTTTCAATCAGACTTAAAATACCACGAAAAAACGGTTCATAATGacagaaatttatttaaatgcacaGATTGTGAAAAGCAATACTCgaccaaaaaattattaaagaatcaTCATCAATATGTTcatctaaatttaaacaaatatagatGCACAGAATGTGGTTTATCTTTCGGAATGTCTATCATGTTACATCGGCATAAAAAAcagAAACACAATAATGTTACGtttaatgcATTGTTGTTTTGTGGAAACGGTGGATTAGGGCTACTGGCGATACCaccttga
- Protein Sequence
- MAPRIQKSRILALADDLCTAATVDKHLGFRQFQTYIHGVVIIIIYLEGFKTHKTHVEQYEFKTLREKKLYKNQMEMYIKSINDKTYMYTKNNSFKNQINDVKIVATRNIPSGILIKTLSGQTAIIKSEDIKKGVNDFSIMSSSRNGKDLLFLGPAAYVNHSCTPNTNWQLTGESLWTAKTIANIKSGEEITADYGTDFFGINNIDCECEYCKQTKKLKPVDEQDKPEDQTSLAIAAVESAVTQVEPMDEQDKPEDQTSLAIAAVESAMTQVESEHSSHTDTDTEDIAVTAYDCNFCEKKFKNKRWYQHHLAVHEENILLCNICQKKFSSKSSLKRHTLLHKPELRKHYTCAICEKEFFQQSDLNYHFKTKHCSETMFQCSKCPNKYSSIKQLKIHENYVHLNLEKYACKDYIVKKYFATGDSYSTIGHSFRVGFSTVSKIVVEVSEAIIKILGPMFLPEPTTAVWKESAKGFYEKWQFSNCIGSVDGKHVTIKCPNNSGTRNYCYLKKFSLVLMAVVDPDYKFICIDVGRYGRNSDGGILEESVMGKRLEAGTLNVPKPVPLPGQIEDTPMVLIGDEAFALKTYLMKPFPRRQSRSNTRLDTYKYRLCRARRVVENAFGILSKKCRVYKGPIELKEETTIKVILATCILHNYLRVKIQLDEDQSVIGALEEVDVNNRRGTNEALQVLENMGNQDQQEDQTSVAMISIKSPVTQVESMGKQDQQKDQTSVAIVSIKSPVTQVVNTDVVKTKQKPNFILPLQFDDDEEYFSSRCIFKKKKILNCEYSNTPITYKCTYPGCERIFQKQIWCTKHLDTHFTKHVCPTCGKTLSSKSTLNRHLQTHVENRKTFKCLTCKQSFFFQSDLKYHEKTVHNDRNLFKCTDCEKQYSTKKLLKNHHQYVHLNLNKYRCTECGLSFGMSIMLHRHKKQKHNNVTFNALLFCGNGGLGLLAIPP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -