Acrc028214.1
Basic Information
- Insect
- Aphis craccivora
- Gene Symbol
- -
- Assembly
- GCA_009835225.1
- Location
- VUJU01003101.1:4910-7565[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.6 67 4.9 0.1 3 21 182 200 180 201 0.78 2 14 0.004 0.45 11.8 1.5 2 21 301 320 300 321 0.93 3 14 0.00098 0.11 13.7 4.0 1 23 328 350 328 350 0.97 4 14 0.00011 0.012 16.7 6.0 1 23 352 374 352 374 0.97 5 14 0.017 1.9 9.8 0.8 1 23 407 430 407 430 0.93 6 14 0.0063 0.71 11.2 3.9 2 23 462 483 461 483 0.92 7 14 0.00032 0.036 15.2 5.7 1 23 489 511 489 511 0.99 8 14 0.00044 0.05 14.8 0.9 1 21 517 537 517 537 0.96 9 14 0.00043 0.048 14.8 3.4 1 23 542 564 542 564 0.98 10 14 5.6e-06 0.00062 20.8 3.5 1 23 596 618 596 618 0.98 11 14 0.72 81 4.7 1.0 2 21 643 662 642 663 0.90 12 14 5.3e-05 0.0059 17.7 2.3 2 23 666 688 665 688 0.96 13 14 0.038 4.2 8.7 1.9 1 23 695 717 695 717 0.97 14 14 0.0096 1.1 10.6 0.9 1 23 747 770 747 770 0.95
Sequence Information
- Coding Sequence
- atgttgaatTCTAATAACAACAATGTCGATTCTGAAAAATGGCAAGAAATTGTATTAGACGAAATTCAATCTGACATAGAAAAttATTCAGATAATGAATTGCCCCTTTCGTCAATAGTGGCTACTAATAACACTAATACCAGAAAATGGCAAGATAATATTCAATCTatcataaaaaatgACTCTAAAAATGAGTTACCTCTTTCATCAATAtccatttttaatgataatcacAAATTTCCAAAACAACAAGAAATCAATTTGGATGATACTCAATCTGACAatgaaaattGCTCAGATAATGAATTGCCTCTTTCATCAATATCCATGTTTAATGATAACCAAAAATGTCCAAAGCATCAAGAAATCAATTTGGATGATACTCAATCTGACAatgaaaattgctCAGATTATGAGTTACCTCTTTCATCAATAGCAAATGTATTGCTTCCAATTGATAGCTGTAAAGTTCAACAATCTGAATCAATTGATTGCCAATCCAaagaactaaataaaatagatacacCAATGAAGAAATATGGGTGTGATATCTGTGGGAAAATATTTCTTAGGCGTATTGcgattattgaacattttaggACTAGTTTATGCTTTCCAGACAGTCCTTTTGATTTTGAACTCAAGAGCCCAAACTATAATTTGTGCAACAATTCTGATAATCCAATGTCatttgtcaaaaatttaagtaatttagaaACTACTAATATGAATGCTATAACCTACAAATGCAGAATTTgtcaaaatgtaattacaaattacaactttataaaaaggcgacaaatattgaatactaaAGATAatcatttatgtaatatatgttcaatattaaatagtattgcaTGTGGCAATAATCAACATCTTAAAGAAAAGTATACATGGAAATGTAAATCTTGTGGGCagaaatttactaaattatctGTTTTAAAAGCTCACAGATGTGTTTTTCCAaagaatatactatttaattgttataaatgtcataaatcttataaaacCGTTAACGCtttagaaaaacataaaaatattcataaattcaatTGCAATATATGTCATAAAAGATTCTTTAAGCAGTCAACTTtaacaaatcataaaaaagtacactgtttaaaaagtattgatCAACGCAATATTCGTCATAAGTACTTAAATTCTAGTGTATTAAAACACACTAACAATGTCCACAATTCATCTCAAAATTATGAATGCTCAAGATGTTCAGAAGTATTTCATAAACGTTCAGAAATAATAgctcatatttttgaaaatcatcaAGAAGATTATTCCAAATATAGTTGTGATGAATgtacaaatttatatgattCTTCACAGgactatattttgtgtttagcAAAAAACTGTTGCAAATGTGATGTTTGTCCCCAGTCATTCACAACAACTCATAGACTACAACAGCATTATGGATGGCATCTTggaattaatagttttaaatgccAATTCTGTCCtaagacattttcaaaatgttctcTTTACTTATCTCATGAAAGAACGCACACAGGAGAAAAACCATTTAGATGTCATTTTTGTGGTAAATGGTTTCCAGatacatcaaatttaaatatccatTTAAAACCTTACAagctttttaaatgtaatatatgccAAAAATCTTATACTCAGatgtcatcattattattccatAAAAGAACACATGCTAAAGAAAAAcgtctagaaaaaaatatgagctATAATCAACTGACAACTTTAGATATGCGTACAAAACGACAAtatactacaaaaaataattttaattgtaaagtaTGTAATAAATCATTCTATCATGCATGgtcattaaataaacatgtaaAAACACATCAAAGCAATAagaatgttaaaaaatcatttccaAACAAATACAAGAGACCACAagaaaatgaacattttattaaatgtgatTTATGCAATGAATTATTTCgtgaccaaaatattttaatgactcaTAGATGTAAGTCATCTACAtgcaaattttgttttaaagtatttaataatgtttcttCACTCAAAAGACACTACAGGTATGTGCatcaaaaaaacaatgaacTCTTTGACTgtgatatttgtaaaatatcatttatgtgTTTAACTAGTCTTAATGAACATATAAAAAGGCACActcattatgaaaaaaatccaCCTCTTACATGCAATGTCAATAATAAAGTAGATACTACAAAACAAGAAATGTATAGAAATGAAGAATATAAATGTGATCTTTGtatgaaaagtttttttagtcAAACACAGATTTTTGCTCATATTCTAGAAACTCATTATtag
- Protein Sequence
- MLNSNNNNVDSEKWQEIVLDEIQSDIENYSDNELPLSSIVATNNTNTRKWQDNIQSIIKNDSKNELPLSSISIFNDNHKFPKQQEINLDDTQSDNENCSDNELPLSSISMFNDNQKCPKHQEINLDDTQSDNENCSDYELPLSSIANVLLPIDSCKVQQSESIDCQSKELNKIDTPMKKYGCDICGKIFLRRIAIIEHFRTSLCFPDSPFDFELKSPNYNLCNNSDNPMSFVKNLSNLETTNMNAITYKCRICQNVITNYNFIKRRQILNTKDNHLCNICSILNSIACGNNQHLKEKYTWKCKSCGQKFTKLSVLKAHRCVFPKNILFNCYKCHKSYKTVNALEKHKNIHKFNCNICHKRFFKQSTLTNHKKVHCLKSIDQRNIRHKYLNSSVLKHTNNVHNSSQNYECSRCSEVFHKRSEIIAHIFENHQEDYSKYSCDECTNLYDSSQDYILCLAKNCCKCDVCPQSFTTTHRLQQHYGWHLGINSFKCQFCPKTFSKCSLYLSHERTHTGEKPFRCHFCGKWFPDTSNLNIHLKPYKLFKCNICQKSYTQMSSLLFHKRTHAKEKRLEKNMSYNQLTTLDMRTKRQYTTKNNFNCKVCNKSFYHAWSLNKHVKTHQSNKNVKKSFPNKYKRPQENEHFIKCDLCNELFRDQNILMTHRCKSSTCKFCFKVFNNVSSLKRHYRYVHQKNNELFDCDICKISFMCLTSLNEHIKRHTHYEKNPPLTCNVNNKVDTTKQEMYRNEEYKCDLCMKSFFSQTQIFAHILETHY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00135629;
- 90% Identity
- -
- 80% Identity
- -