Acrc008436.1
Basic Information
- Insect
- Aphis craccivora
- Gene Symbol
- -
- Assembly
- GCA_009835225.1
- Location
- VUJU01000711.1:61170-78995[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4.6e-06 0.00052 21.0 2.9 1 23 110 132 110 132 0.98 2 10 0.024 2.7 9.3 0.1 3 20 199 216 198 219 0.92 3 10 0.024 2.7 9.4 8.3 1 23 225 247 225 247 0.95 4 10 2.2e-05 0.0025 18.9 0.9 1 23 253 275 253 275 0.98 5 10 1 1.1e+02 4.2 0.0 2 23 414 436 413 436 0.91 6 10 0.00017 0.02 16.1 1.7 1 23 454 477 454 477 0.94 7 10 0.00014 0.016 16.3 2.7 1 23 487 509 487 509 0.97 8 10 3e-06 0.00033 21.6 2.1 1 23 649 671 649 671 0.97 9 10 8.2e-06 0.00092 20.3 0.2 1 23 677 699 677 699 0.97 10 10 3.5e-06 0.00039 21.4 4.1 1 23 705 727 705 727 0.98
Sequence Information
- Coding Sequence
- atgttcatAttaataaatacaacaaatatttcattaAGTACCTACAGAtataatACAatcTTTGATTGGAGAAGTCGCCCACTGGCAACACACCtggaaaatAAATACTTGTACatcttCTTGAAGAAAGAAGCTGACTGTGACAAGACTGACGACCGAAGCATTCAAGGAGAAAGCTCTTCAGAATACCGGAGTATACCAGATCCGGAGCGCGACAGCagaacgacgacgacgacaccTACGCCTACGCCAACGACGCCGACACCGgccacgacgacgacgacggacgCTGTGGTCGCTTTGGCCACTACGATACCACCGCGGTTTTACACGTGCTTGTACTGCAACCTAACGTTCCCGCATCAGAGCAAACTGACGCGACACATACTGTCGCACAGCCTGGACAACAACCAACCGGGCGGCACGTCGTTCACGGACCCGGGCGGCGGCATGACCGTACCGCCGCCCCTGTcgtcgtcggcggcggcgCTGTCGCTGTCGCTGTTGTccgcgtcgtcgtcgtcggcagCGGCGTCGCTGCAACAGGCGTGCGGCATCACCGGTGCCATGGACGACGGCGTGGGCGGTACGCTGTGCAAGTTTTGCGGCAAAACGTTCCCGGACGTGGCCACGCTGGTCGGCCACCTGCCCGCGCACACCGGCGACCGGCCGTTCAAGTGCGAGTTCTGCGGCAAAGCGTTCAAGCTCCGGCACCACATGAAGGACCACTGTCGCGTGCACACCGGGGAACGGCCGTTCCGGTGCGCGTTGTGCGGCAAGACGTTCAGCCGGTCGACGATACTCAAGGCGCACGAGAAGACGCACTACCCGAAGTTCACGGGCCGGCACCGGTTCGTGTCGTCGCCCAGTCCCGAAGAGGAACCCGGGGGAGGAGGAGGTGGAAGTGGTGGAGGTGGAGGAATCGGGGCAGGAGGTGGAGGGTTGGGTAATTTCGGAGGCGGAATGGCGCAGGCGGTCGCGACGATCGCGTCCGCCGCCGTCAGACCGTTCGACTTGACCGAAGTTTGCTTGGTGGAAGGGGTGTTCAACACGTTGGCCGCATACAGGTCGCAAGTTTCCGTTCTACAACAAGGATTTTCCGCTTTCAGTCGGTTCTCGACTCTGCCACCCGTTTACAATacagAAACGTCCGTGTCGCTGTATTCGGTGCTCCAACAACAAGGGCTGATCGGGCCGTGCGTGAGCTCCAGCGACGAGGTGGCCAGCCGGTGCCTGATCCGGTGCGCCATTTGCCTGGCGGGTTTCCCGTCCACGTGGCTCCTCGAACAGCACACGGCCCTGCAGCACACCGGTCAACCGGTGCGCGGTCAcggcggcgacggcggcgACGAGAAACCGTTCCAGTGCGACCAGTGCGGCCAGAGTTACCGTTACCGTTCGGCCTATCTCAAACACCGCGAACAAAACCACAGGGCCCGCTTGCCGGCCGACAAGCTGTTCACGTGCGACATATGCGGCATGCAGTTCAGGTATCTCAAGTCGTTCAAAAAGCATCGGCTCAACCACGCGCTGGAGAGGCTACAGCGAGACGTGCCGGCGGCGGTGACGGCTGCGCACAGCGACGACAGCCGAGACGTGCCGGCCACGCCGACCGCGGCCAAGTCGTCGGCGTCCGACAGCCAAGTGACCAGCACGAACGAAGTGGTGTCCGCGGTGTCGTCGGCGGCCGGACAGCAGAAGGCGGCCGGCGACGTGGCCACCACTTCGCCGCCGTCGCTGTTCAACATGCTCAGATCGAACGCTCAACGcacggccgccgccgccgcagccGCCGCGGTGGCTGGGTCCACTCCGGTGGCCGTTGCCGCCGCGGCGTCCGCGGCCGCAGCTGTGACGACGGCCGCCAACGCCAACAACAACGGTACCGGcattaacaacaacaacaacaataacaacaacaacaacaaccgAGACGCTAAATCGTTCGCTTGCCCGTTCTGCGGCAAGTGCGTCCGATCCAAGGAAAACCTAAAACTGCACGTGCGCAAGCACACGGGCGAACGGCCGTTCGCGTGCCTGTTCTGCGGCCGAGCGTTCGGCGGCAAAAGCGATTTGACTCGACACCTGCGCATCCACACCGGAGAGCGGCCGTACCACTGCGAGATGTGCGGCAAGTGTTTCGCCAGGGCGGACTACCTGTCCAAACACCTGACCACGCACATACACAACAACCATCAGCGCTGA
- Protein Sequence
- MFILINTTNISLSTYRYNTIFDWRSRPLATHLENKYLYIFLKKEADCDKTDDRSIQGESSSEYRSIPDPERDSRTTTTTPTPTPTTPTPATTTTTDAVVALATTIPPRFYTCLYCNLTFPHQSKLTRHILSHSLDNNQPGGTSFTDPGGGMTVPPPLSSSAAALSLSLLSASSSSAAASLQQACGITGAMDDGVGGTLCKFCGKTFPDVATLVGHLPAHTGDRPFKCEFCGKAFKLRHHMKDHCRVHTGERPFRCALCGKTFSRSTILKAHEKTHYPKFTGRHRFVSSPSPEEEPGGGGGGSGGGGGIGAGGGGLGNFGGGMAQAVATIASAAVRPFDLTEVCLVEGVFNTLAAYRSQVSVLQQGFSAFSRFSTLPPVYNTETSVSLYSVLQQQGLIGPCVSSSDEVASRCLIRCAICLAGFPSTWLLEQHTALQHTGQPVRGHGGDGGDEKPFQCDQCGQSYRYRSAYLKHREQNHRARLPADKLFTCDICGMQFRYLKSFKKHRLNHALERLQRDVPAAVTAAHSDDSRDVPATPTAAKSSASDSQVTSTNEVVSAVSSAAGQQKAAGDVATTSPPSLFNMLRSNAQRTAAAAAAAAVAGSTPVAVAAAASAAAAVTTAANANNNGTGINNNNNNNNNNNNRDAKSFACPFCGKCVRSKENLKLHVRKHTGERPFACLFCGRAFGGKSDLTRHLRIHTGERPYHCEMCGKCFARADYLSKHLTTHIHNNHQR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -