Acrc000463.1
Basic Information
- Insect
- Aphis craccivora
- Gene Symbol
- ZNF236
- Assembly
- GCA_009835225.1
- Location
- VUJU01001124.1:7801-17094[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.011 1.2 10.4 3.1 1 23 185 207 185 207 0.96 2 13 0.0012 0.14 13.4 1.7 1 23 213 235 213 235 0.98 3 13 1.6e-05 0.0017 19.4 1.1 2 23 241 262 240 262 0.97 4 13 0.0046 0.52 11.6 0.1 2 20 269 287 268 289 0.91 5 13 0.00023 0.025 15.7 1.1 2 23 309 330 308 330 0.97 6 13 3.4e-07 3.8e-05 24.6 3.4 1 23 360 382 360 382 0.99 7 13 0.00011 0.012 16.7 2.6 1 23 388 410 388 410 0.98 8 13 8.4e-05 0.0094 17.1 8.7 1 23 416 439 416 439 0.98 9 13 0.051 5.7 8.3 4.5 1 23 449 472 449 472 0.96 10 13 5e-05 0.0056 17.8 1.1 2 23 759 780 758 780 0.97 11 13 1.2e-06 0.00014 22.9 0.2 1 23 786 810 786 810 0.98 12 13 0.00094 0.11 13.8 0.4 2 23 818 839 818 839 0.97 13 13 0.00021 0.024 15.8 1.0 1 23 845 867 845 867 0.98
Sequence Information
- Coding Sequence
- ATGGATAATCAACTAGATATTATGTTAGAAAATACCGATTCAGAATTTATTACCTTAACGTATGATGATCATTCATTGGTCTCTCATCCTGAACAATTATCTGCCGACTGCACAGATATGAacCCAGTtaattgtcaaaatattaatggcATGACtccattaaatgatttattattgggACAAACATTCTTAATAGAGACTAATGATCAACCGTTATTTGTAAATGGTACAGAGtTGATTACATTCCAACATATTGACTCTAATGGACAAATAAATGATATCCAgactatttcaaataatatcgactctaataaatcaacaattgaaaatattaattctactATGAATTCTGATGATCAAATCCAAGAAGTTTATTCAGAttttaataaaaccaatttggatataataaaaactgccAATGATAGTAACAATTTGAAAGAACATTTGCAAGTTACGATCAATACTGATATAACTAGTGGGAATTACAGTTATTCGACTGCTATTAAAATTTTGGACGATGTCGCTAAAAGTCCTGTTGATAGTAATgGTCATTTTGTTTGTGATTTATGTTTACATGAATTTTACAACTGGAAGAATTACAAGAAACATAAACTAGAACATTTAAATGACAAgccatttaaatgtttgaaatgtttaaaatcatttaactataataatAATTATCTACTTCACATTGCTTCTCATTCaacaagtaatttaaaatgtccaaaatgtaaaaaagaatttaaacgCATAGCTAGCTTTAAAgctcatttaaaaattcataaaactgAAGAATTGATTACATGCAAtatttgtgataaaatatttgacaatcagtaccgATTGGACATTCATAAAGAAAATTGTATGcaagaatatataattaatcctGACGAAGGAACATCTGTTGATTGTATTAAAACTTGTAcagtttgtaataaatttttttcaactttaccAGAAtacaaaatgcatataaaGGAACATAGAAAAtttgattcggtgttaaaaaaatatcataaggttacttcaaaattaaaaaaactgcataaaacaaacaataaagttaaaaaatttaaatgtgatCATTGTGATTGGTCATTTAATAAGTCAAATCTTTTACTTCGTCATATGAGGACACATACTGGAGAAAAACCATTTGaatgctCATCTTGTTCAAGATACTTTACTCaacaaaattcattaaatagacATCTGTTAAAACATAAAGGAATACGACCATTCAAATGTGAATTCTGTGATATGAGTTTTTGTCAAAAAGgtcatttaattaatcatatgAAAAAATGTCATGCCGTTACAAAGGAAGAAACAAGAGTTCATAAATGTTTCATGTGTTCTTGTGTTTACAATAGTTCTAATGCTCTTAGTAAACATTTGAGTGTTTACCATGGATTGAAAACTAAAGACTTAGATAAAACTGTTCGAAATCATGTAAGAAAGAGTATAGAACTAATTGATGATGAATCTATACATTCaattaaagatCATTCAAAGTTAGAACAATGGCTTGAAGAAGCAGCTCATGAATTGCAAAGTGGtcataataataccaaattaaaagaTTGCAATGATACAATTACTAATCAATGTGACTTTGGATTAAATCTAATTGaaaatgaacattttgatCAAATTTTAAGCCCGATttctaatataactaatagtgatcacattgaaattgaaaacttGACATATTCACTTGCAGatggtgaaaattatattgtcatgAAGAATAAACAAGATCaatcaataattgaaaatgttattgtcCAAAGCCaaGAAATAGAACAAGTAACAACTGCTACTGAAAACGGATCAATATctttaaatgttgtaaaagAAACCATTGAAAAAagTATAGAACCTGTAATAACTGCTATTGAAGATGaatcaatatcattaaatgtaGAAAAAGAAACCACTAAAGAGGATATTGGACCTACTGACACGACTGCTACTGAATCAATGACATtgagtgttttaaaaaaaaccactaaaaagCTCCctccaagaaaaaaaaaatgtggtaaTAAAATGTCTAAAGTGGATGCCCAAAAGATTTTatcaaaaaaaaaatatgtgagtAAAACGTTGAACATGAAAAAAAGGAATAGCATTAGTAATGAAGTTAAGAgaagtataaataatgcaaGTAGTAAAAAAGAaccaaaagttatatttataccaaatataGCTACTAATTCAGAAGAAAGAACCATTAGtattacAAAAAAACCGTCGCCAAAAGTGTGTCaattctgtaaaaaaatatttaaaaaaaatgctgaTCTTGAAAGACATGAAAGAATACATACTGGTGACAAACCATATAAATGTGACCAACCAGATTGTAATAAAGCATTTGCCACTAAGAGTTCACTcgaatatcatataattacacATTCAGGTAAGATGAAAAGAGCCGAGTGCCCTCAGTGTAAAGGATTATTTGCTACCACCTCAACTTTGAAAGTTCATATGCGACAGCATACaggtgaaaaaccatttaaatgtCCTGTATGCGGAGATGCATTTCGAACAACTGGGCATTTACATACACATGTGATAATTCatgaacgaaaaaaaaaacccaaataa
- Protein Sequence
- MDNQLDIMLENTDSEFITLTYDDHSLVSHPEQLSADCTDMNPVNCQNINGMTPLNDLLLGQTFLIETNDQPLFVNGTELITFQHIDSNGQINDIQTISNNIDSNKSTIENINSTMNSDDQIQEVYSDFNKTNLDIIKTANDSNNLKEHLQVTINTDITSGNYSYSTAIKILDDVAKSPVDSNGHFVCDLCLHEFYNWKNYKKHKLEHLNDKPFKCLKCLKSFNYNNNYLLHIASHSTSNLKCPKCKKEFKRIASFKAHLKIHKTEELITCNICDKIFDNQYRLDIHKENCMQEYIINPDEGTSVDCIKTCTVCNKFFSTLPEYKMHIKEHRKFDSVLKKYHKVTSKLKKLHKTNNKVKKFKCDHCDWSFNKSNLLLRHMRTHTGEKPFECSSCSRYFTQQNSLNRHLLKHKGIRPFKCEFCDMSFCQKGHLINHMKKCHAVTKEETRVHKCFMCSCVYNSSNALSKHLSVYHGLKTKDLDKTVRNHVRKSIELIDDESIHSIKDHSKLEQWLEEAAHELQSGHNNTKLKDCNDTITNQCDFGLNLIENEHFDQILSPISNITNSDHIEIENLTYSLADGENYIVMKNKQDQSIIENVIVQSQEIEQVTTATENGSISLNVVKETIEKSIEPVITAIEDESISLNVEKETTKEDIGPTDTTATESMTLSVLKKTTKKLPPRKKKCGNKMSKVDAQKILSKKKYVSKTLNMKKRNSISNEVKRSINNASSKKEPKVIFIPNIATNSEERTISITKKPSPKVCQFCKKIFKKNADLERHERIHTGDKPYKCDQPDCNKAFATKSSLEYHIITHSGKMKRAECPQCKGLFATTSTLKVHMRQHTGEKPFKCPVCGDAFRTTGHLHTHVIIHERKKKPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00135601;
- 90% Identity
- iTF_00135601; iTF_00136319;
- 80% Identity
- -