Acrc029078.1
Basic Information
- Insect
- Aphis craccivora
- Gene Symbol
- -
- Assembly
- GCA_009835225.1
- Location
- VUJU01001954.1:15164-20493[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 9.1e-06 0.001 20.1 0.4 1 23 107 129 107 129 0.96 2 23 8.6e-05 0.0097 17.0 2.7 2 23 139 161 138 161 0.97 3 23 0.0014 0.16 13.2 3.0 1 23 197 219 197 219 0.99 4 23 0.095 11 7.5 0.4 2 23 225 246 224 246 0.94 5 23 1.7 2e+02 3.5 5.2 1 20 251 270 251 272 0.91 6 23 0.043 4.8 8.6 0.7 2 21 294 313 293 318 0.92 7 23 0.0088 0.99 10.7 0.7 1 23 319 341 319 341 0.93 8 23 0.16 17 6.8 2.2 1 23 646 668 642 668 0.88 9 23 0.00027 0.031 15.5 1.3 1 23 738 760 738 760 0.96 10 23 0.066 7.4 8.0 3.6 1 23 766 788 766 788 0.97 11 23 0.055 6.2 8.2 10.4 3 23 844 865 843 865 0.96 12 23 0.00016 0.017 16.2 1.1 3 23 908 928 907 928 0.98 13 23 0.0015 0.17 13.1 3.9 1 23 934 956 934 956 0.98 14 23 2.8e-05 0.0031 18.6 1.0 1 23 998 1020 998 1020 0.97 15 23 0.004 0.45 11.8 1.0 1 23 1026 1048 1026 1048 0.97 16 23 0.0035 0.39 12.0 0.8 2 21 1080 1099 1079 1100 0.94 17 23 0.0023 0.26 12.5 1.7 1 23 1130 1153 1130 1153 0.97 18 23 4.6e-05 0.0051 17.9 0.1 2 23 1199 1221 1198 1221 0.95 19 23 0.0024 0.26 12.5 4.9 2 23 1229 1251 1228 1251 0.97 20 23 0.0012 0.14 13.4 0.9 1 23 1283 1305 1283 1305 0.97 21 23 0.00032 0.036 15.2 0.2 1 23 1310 1333 1310 1333 0.95 22 23 0.0016 0.18 13.0 0.7 2 23 1365 1386 1365 1386 0.98 23 23 3.6e-05 0.004 18.2 3.4 1 22 1392 1413 1392 1413 0.96
Sequence Information
- Coding Sequence
- ATGACTCCAATGAAAGATTACATAAAAGTTGAAGTCACTGGTGATGCTGATGCTGTTACCagTGAATTATATGTTGAAAACACTATTGAAAATCCTGCATGGTATACAGTTGAAGATAATCACGTATCTTTGGtatctgaaaatattgaaaaggtTATCAAACTTGAAACTGATATGTTGGATGACTGTATGTGGGAAAGTAGAATTGAAATTTCTAAAGATGTTGCCAATCAAAGTAATGCTGAGTTACCTTTGGAATCTCTGAATGTCGCAGTCAATAATATTGACTTAAATCCTGAAAATacaagtaataaaatgttttactgtaatatttgTGGAAAAAGTTTCgctttaaattatcttttaaaaaatcacttgGCAGAACATAAAAgacgaataaatattaaaaccaacaaatgtaaatattgtggAAGACAGTTCAAGTTAAAATTTGGTTTGAATAGGCACAttcaaaaatttcataaagAACACATGAAAAGCCATGAAAATAATGAAGCTAGAATTGATACTAttcctaatataaaattacgcaAATTGAATGGTGTTTGGAAAAGTAagacaaatgtatttaaatgtaacatttgttttcaaaaatatcatagtgaaaaaaatttagtagaACATATGGAAACTCATGACAATTGCCAAACACAGTGTAATGATTGCTCAAAGTATGTATCAGTTTCTGAATTGAATGACCATATGCAACAAttgcataataaacatttatttaaatgtcagAAGTGTAATctacaatttgaaaaacaacaacattTAAACTGTCATTTAATTCATTGcttaaaaaattctcaaactAAATCAAATAAGGTTTGTGGACCATTCAAGAATGATTCAACAACTTGTTCTGCTTgtggaattatatttaataattccttatcattgaaaaatcatataactATTGGTTGTAAGCATTATACTTGTAAATATTGTGGacaatattttagttcaaGGATTATATGGCGAAGACATGTGGATGTTCATGAAAAAGATGAACAACATGAAATGTGtagagtaaataaattatctacaattagaaaatataatcaaactgAGGCTGTAAATGATTCTTCTTTTAATACAAATGAAGGACAATTATTATCCAGAAATGTTACAAGAAGATATAATTCagaacaaaacaatttagttAACAGCAATTCAACAACTGTATCAACTGCTTCAAATACTTCGCATCAAGTGATTAACAATCAACCAACTGTATCTGTTGTTCTTCAAAATTCAATAGCAAACAATTgtcttgttttaaatattaaacaagaaaaaatcATGAGTACAGATGCTGTAGAAACTAATAGCTCAGATCAAATAAATGTAGCAAACAGTAATGAATCAACGATTTCGACTGTTTCACATAACTCAATAGTGAACGATTGccatatcttaaatattaaggAAGAAAAAAACACGAGTACAAATGTCATAGAAACAAATAGTTtagatcaaataaatttagaaaatagtaATGAATCAATGATTTCGACTGTTTCACAGAACTCAATAGTGAACGATTGCCTTGTCTTAAATATTAAGCAAGAAAAAAACACGAGTTTAAATGTCAGAAGAAGGAAAAATTCTGATCAAATGGACTTGGTGAATGACAATTTACCAACTGTGATAAACAGACTTAATAACTTAATGGCATATGAAAaccctattaatattaatgtagctAATAATTCTGTTTCTACAATTAGAGAAACACCTTATATCTGTATTAGAAAATTgccatatattaaaaatgtattttacaatgatgttaaTGATCAGACatcacaaaataatgttatatttatatgtagaatttgtaaaaaatctcCGTCTACAGATATACATTCGTTCGCATTGCACATGAGTGAACACATTGAATGCAATATGCATGAATGTATTGTGTGTGATAAGAAATTTAGCACTGTACTTCTTTGGACTAACCATATGACTTATCATCAACAgcaattagatttaaatatatcagcaGTTCAATTTAATCTTACAGAAACTGAATCTAATACATCAGTCCCAATTAATTCTGGAAATATGGAACCACAAGTTTGTTCAACCTCAAGAAATAGAAAATTCAAGACGTCTTCATTGGATGATTCTTATTCAGATATAACCAGCACGAATAATAGTgtcaataaagtaaaatatcaatatgacTGTAgtacatgtaaaaaaatatttccttcCAAAGTCACACTAAAATCTCACCAAACTCTTCATGCGAAACCACAATCATTTTCATGTAGGTATTGTGATAGAATATTTTCTGGAAAGGGTCAGTGTACAAATCATGAAAAATCTCACATTGGTTTAGATGAAGtgtgttttcaaaataatgagaATTATACACCTGAAGCAATTTTAATCCAAAACAATATAAGCATagaaaataacaacattaacATGGAGACAATgtcaattaaacataataataaaaacaaactatcatcaactataaaaaaaaatcattgtcacttatgtaataaaaaattttcaaagcgctgttattttacaaatcatatgcaaataaagcataatattaatccAAATTTACCAAAACAACTTAAATCAATTTctgaatatgaaaataaattaccagcTCCGATAGATAGTGATTTGAATAATCAtcttaataaaagtaatgagaagaaatcaaaattttgtaccatttgtaataaatattttgcacaTATGGGTGCCTTAACTAATCACATGAATATTCATATAGATCGTAAACCATACAAATGTCAATATTGTTACAAACAATTTAGTAAGAAAGCCTCTTATATTTTGCATGAGAAAAAACACTTGTTAAAAAATGAAGTTAATGAAGAACCACAAATCGAAAATAGTAATGATTttgagttaatttataatccaGTTGATGGGAATTCAaatgatacaaatttaattaacatgaaAGATTTATGGTTTATCTGCGATGTATGTGAGAAAAAATTCTCTACTCCATTCCAACTGAATTTACATCGAAAGTTACATTCTGATATTGTACCATATGTATGTAAGATTTGTAATAGATCTTATACACTGAAATTTCGCTGGAATTGGCATTTAAAAGGCCATTACCTAAGAcatattagaaatttaaaaaataaacgacatactaataatataaaatcaaagatTGAATCTATACAACATTATCAAGATAGAATAAAATGTCGATAttgtaaaaaagaatataactCAATATCTCAGTGGAAAAAACATATGACAATGAACAAGGAATGTCGTCGCCATTGTAAAAATAGCCTTCCAGACTTTGCATCAAGTCATGCTTTAAAGAATCTTACCAAATCTTGTCGTTTTaagtgtaatatttgtatgaaaacATATAGTACCTCTTACAATCGttcaatacatataaaaaatgtccatAATGAGTTAAATActacagttttaaataatcataataataccaattttCAAAAAGACAAACCAATGGAAATAATTCAAGAGAAACCagtgattaaaaaacaaaatagaagTAATCATATAGATGGCAGTGACACTAAATGTAAGTTATGTGGTAAAGTATATAGTAGTGCAGCTAATTTAGGCCGCCACGTGTCCATTATCCACACAAAGCGTTATAAACCTATGACCTGTAATGTTTGTGCAAGGACATTCAAACACAAATTTTCTTTTagagaacatttaaaaactaaacacaaaaaattatttaaaaattatgaagaaataaacgttaaaaatacAAGAGTCAACaggaaaattatatcaataaataaaaaaaggattatgaaatacttttgcaaaatttgtaaaatgaaGTTTGCtgacaatattacattacaagAACATTCAAAGATACATATAGttgatatgtataattgtaaagACTGTGGTCAGCAATTTGAGACAAATGTTACTCTTGGTAATCATATTATGGAAAACCATAGTGGTGATATttctatatctaataaaaacaatcataTTGAGAATTATGAGAACCAAAATGCttctttagaaataattaataataatcctgctcaatgtaaaatttgtttgaaaatcttAAAAGATCCTGGATATTTACATGAACACATGAGATTACATACAGGTGACAAACCGTTTAAATGTGATAAGTGCAATATGACTTTCAGATTTAAATCGAACTTAAGAATGCATCAGAAGAAAGGTCTACCATGCTCTAtcccataa
- Protein Sequence
- MTPMKDYIKVEVTGDADAVTSELYVENTIENPAWYTVEDNHVSLVSENIEKVIKLETDMLDDCMWESRIEISKDVANQSNAELPLESLNVAVNNIDLNPENTSNKMFYCNICGKSFALNYLLKNHLAEHKRRINIKTNKCKYCGRQFKLKFGLNRHIQKFHKEHMKSHENNEARIDTIPNIKLRKLNGVWKSKTNVFKCNICFQKYHSEKNLVEHMETHDNCQTQCNDCSKYVSVSELNDHMQQLHNKHLFKCQKCNLQFEKQQHLNCHLIHCLKNSQTKSNKVCGPFKNDSTTCSACGIIFNNSLSLKNHITIGCKHYTCKYCGQYFSSRIIWRRHVDVHEKDEQHEMCRVNKLSTIRKYNQTEAVNDSSFNTNEGQLLSRNVTRRYNSEQNNLVNSNSTTVSTASNTSHQVINNQPTVSVVLQNSIANNCLVLNIKQEKIMSTDAVETNSSDQINVANSNESTISTVSHNSIVNDCHILNIKEEKNTSTNVIETNSLDQINLENSNESMISTVSQNSIVNDCLVLNIKQEKNTSLNVRRRKNSDQMDLVNDNLPTVINRLNNLMAYENPININVANNSVSTIRETPYICIRKLPYIKNVFYNDVNDQTSQNNVIFICRICKKSPSTDIHSFALHMSEHIECNMHECIVCDKKFSTVLLWTNHMTYHQQQLDLNISAVQFNLTETESNTSVPINSGNMEPQVCSTSRNRKFKTSSLDDSYSDITSTNNSVNKVKYQYDCSTCKKIFPSKVTLKSHQTLHAKPQSFSCRYCDRIFSGKGQCTNHEKSHIGLDEVCFQNNENYTPEAILIQNNISIENNNINMETMSIKHNNKNKLSSTIKKNHCHLCNKKFSKRCYFTNHMQIKHNINPNLPKQLKSISEYENKLPAPIDSDLNNHLNKSNEKKSKFCTICNKYFAHMGALTNHMNIHIDRKPYKCQYCYKQFSKKASYILHEKKHLLKNEVNEEPQIENSNDFELIYNPVDGNSNDTNLINMKDLWFICDVCEKKFSTPFQLNLHRKLHSDIVPYVCKICNRSYTLKFRWNWHLKGHYLRHIRNLKNKRHTNNIKSKIESIQHYQDRIKCRYCKKEYNSISQWKKHMTMNKECRRHCKNSLPDFASSHALKNLTKSCRFKCNICMKTYSTSYNRSIHIKNVHNELNTTVLNNHNNTNFQKDKPMEIIQEKPVIKKQNRSNHIDGSDTKCKLCGKVYSSAANLGRHVSIIHTKRYKPMTCNVCARTFKHKFSFREHLKTKHKKLFKNYEEINVKNTRVNRKIISINKKRIMKYFCKICKMKFADNITLQEHSKIHIVDMYNCKDCGQQFETNVTLGNHIMENHSGDISISNKNNHIENYENQNASLEIINNNPAQCKICLKILKDPGYLHEHMRLHTGDKPFKCDKCNMTFRFKSNLRMHQKKGLPCSIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00136312;
- 90% Identity
- -
- 80% Identity
- -