Acrc011393.1
Basic Information
- Insect
- Aphis craccivora
- Gene Symbol
- -
- Assembly
- GCA_009835225.1
- Location
- VUJU01001476.1:47154-49293[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.9e-05 0.0043 18.1 0.5 2 23 127 148 126 148 0.96 2 14 1.1e-05 0.0013 19.8 0.9 1 23 154 176 154 176 0.97 3 14 7.5e-06 0.00084 20.4 0.6 1 23 182 204 182 204 0.98 4 14 3.3e-07 3.7e-05 24.6 1.1 1 23 210 232 210 232 0.99 5 14 5.2e-05 0.0058 17.7 1.4 1 23 238 260 238 260 0.98 6 14 1.6e-06 0.00018 22.5 2.0 1 23 266 289 266 289 0.98 7 14 3.7e-05 0.0041 18.2 0.5 1 23 295 317 295 317 0.96 8 14 0.00055 0.061 14.5 1.8 1 23 323 345 323 345 0.97 9 14 1.2e-05 0.0013 19.7 1.7 1 23 351 373 351 373 0.96 10 14 1.2e-05 0.0014 19.7 0.5 1 23 379 401 379 401 0.98 11 14 2.3e-05 0.0026 18.8 2.0 1 23 407 429 407 429 0.98 12 14 1.6 1.8e+02 3.6 5.3 1 23 435 458 435 458 0.97 13 14 6.7e-06 0.00075 20.5 1.9 1 23 464 486 464 486 0.98 14 14 9.7e-06 0.0011 20.0 0.5 1 23 493 515 493 515 0.98
Sequence Information
- Coding Sequence
- ATGAGAGGTACATGTTCGCATACAAATGGGacagatttaattattaaaatatctaatatatcgGGCAAATGGTTTGTATCTGTTGGaaaAAGTATGTGTAGacctaatgaaataaatacaattcgtagtgaaattaaaattgaaagagATTTAATCGATAGATATGAGTTTGAAGGAATAGTTTCTAACAACAGCCATACCTTGGAAATCATTAACTGTATGGAATTGGGAATGAGATCTAACTCAAAGGAAAAAGTCCCAGACAAACTTCAAATCAATAAGCAATTTCACACTGGAGATAATCCTCAGGAACGTAACAAACCATCAAACGTAAAAACAGATATGATAAAACACATTAATACAGGAGAAAAGCCCTTAAAATGTGATGTTTGTCAGAGagcttttaatttcaaatcataTTTGGCAAGACATGTTACGATTCATTCAGGAGAAAAGCCTTTCAAATGTGATGTTTGTCAGAGagcttttaatttcaaatcataTTTGGCAAGACATGTTACGATTCATTCAGAAGAAAAGCCCTTCAAATGTGATGTTTGTGAGAGAGCTTTTAGGTTGAAATCAGATTTGAAAGTACATAAAATGATTCATACAAGTGTAAAGCCCTACAAATGTGATGTCTGCCATAAAGCTTTTGTTAGATCTATTGCCCTACAGTACCATATGAGGATTCATAATGGAGACAAACCTCACAAATGTAACATgtgtaaaaaatcatttggTATACTAGGTGGATTAAAAAAGCATATGTTGATTCATATAGAAGAGAAGCCCTTCAAATGTGATGTCTGCCATAAAGCTTTTATTAGAACAGATAACCTAAAGTACCATATTATGAAGATTCATAATGAAGACAGACCTCACATATGTGACGTgtgtaaaaaatcatttgcAATGTCAGGtggattaaaatatcatatgctGATTCATTCTGATTATAAGCCTTATAAATGCATTATCTGTGATAATGGATTTCGTCaatcacataatttaaaaattcataatagaaTACATACTGGGGAAAAGCCTTACAAATGcacaatatgtaattatagatTTTCTTCATCTTCAGGCTTaacatatcataaaatacttcATGCCAGAGAAAAGACTTATAAATgtgatatatgtaataaagcatttataattagttctaGTCTCACATATCATAAAATGATACATAGTGGGGAAAAGCCTTTTAAATGCAACATCTGTTTGAAAACATTTAGTAGTAAAACAAGTATCACACTTCACATGAGTTCTCATACTGGATATCTGCCTcacaaatgtaatatttgttgtaaattgCTTGTTTCCATTTCAAAATTGAACCATCATATTATGAGACTACACTCTGGAGAAGCTCCTTATGAATGTGATATCTGCAATCaatcatttaatacaaaaccaAAGTTGACAACTCACATTATGCATCATTTAGGAAATGACAAACCTTACAAATGCAAGATCTGTATCAAAACATTTGGGACGAATGGAGAACTTAACCGTCATCAATTAGTTCATACGGGAGTAaagcaatataaatgtattatttttcctaAAGCATTTGGTAAATCTCACCAACTTAAGTACCATAATGATGATTCATAA
- Protein Sequence
- MRGTCSHTNGTDLIIKISNISGKWFVSVGKSMCRPNEINTIRSEIKIERDLIDRYEFEGIVSNNSHTLEIINCMELGMRSNSKEKVPDKLQINKQFHTGDNPQERNKPSNVKTDMIKHINTGEKPLKCDVCQRAFNFKSYLARHVTIHSGEKPFKCDVCQRAFNFKSYLARHVTIHSEEKPFKCDVCERAFRLKSDLKVHKMIHTSVKPYKCDVCHKAFVRSIALQYHMRIHNGDKPHKCNMCKKSFGILGGLKKHMLIHIEEKPFKCDVCHKAFIRTDNLKYHIMKIHNEDRPHICDVCKKSFAMSGGLKYHMLIHSDYKPYKCIICDNGFRQSHNLKIHNRIHTGEKPYKCTICNYRFSSSSGLTYHKILHAREKTYKCDICNKAFIISSSLTYHKMIHSGEKPFKCNICLKTFSSKTSITLHMSSHTGYLPHKCNICCKLLVSISKLNHHIMRLHSGEAPYECDICNQSFNTKPKLTTHIMHHLGNDKPYKCKICIKTFGTNGELNRHQLVHTGVKQYKCIIFPKAFGKSHQLKYHNDDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -