Basic Information

Insect: Aphis craccivora
Gene Symbol: -
Assembly: GCA_009835225.1
Location: VUJU01003248.1:16988-19650[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.4e-06 0.00016 22.6 6.2 2 23 109 130 108 130 0.97

2 13 2.1e-08 2.4e-06 28.4 0.8 1 23 136 158 136 158 0.99

3 13 0.00059 0.066 14.4 0.4 1 23 164 186 164 186 0.96

4 13 2.5e-05 0.0028 18.7 2.7 1 23 192 214 192 214 0.97

5 13 4.3e-07 4.9e-05 24.3 1.0 1 23 220 242 220 242 0.99

6 13 1.3e-06 0.00015 22.7 2.4 1 23 248 270 248 270 0.99

7 13 7.3e-07 8.1e-05 23.6 1.9 1 23 276 299 276 299 0.97

8 13 1.8e-06 0.0002 22.3 0.7 1 23 305 327 305 327 0.97

9 13 1.1e-07 1.2e-05 26.2 0.4 1 23 333 355 333 355 0.99

10 13 9e-06 0.001 20.1 3.3 1 23 361 383 361 383 0.98

11 13 3.7e-05 0.0041 18.2 5.1 1 23 389 412 389 412 0.96

12 13 3.3e-06 0.00037 21.5 1.8 1 23 418 440 418 440 0.98

13 13 2.8e-05 0.0031 18.6 5.6 1 23 446 469 446 469 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.4e-06	0.00016	22.6	6.2	2	23	109	130	108	130	0.97
2	13	2.1e-08	2.4e-06	28.4	0.8	1	23	136	158	136	158	0.99
3	13	0.00059	0.066	14.4	0.4	1	23	164	186	164	186	0.96
4	13	2.5e-05	0.0028	18.7	2.7	1	23	192	214	192	214	0.97
5	13	4.3e-07	4.9e-05	24.3	1.0	1	23	220	242	220	242	0.99
6	13	1.3e-06	0.00015	22.7	2.4	1	23	248	270	248	270	0.99
7	13	7.3e-07	8.1e-05	23.6	1.9	1	23	276	299	276	299	0.97
8	13	1.8e-06	0.0002	22.3	0.7	1	23	305	327	305	327	0.97
9	13	1.1e-07	1.2e-05	26.2	0.4	1	23	333	355	333	355	0.99
10	13	9e-06	0.001	20.1	3.3	1	23	361	383	361	383	0.98
11	13	3.7e-05	0.0041	18.2	5.1	1	23	389	412	389	412	0.96
12	13	3.3e-06	0.00037	21.5	1.8	1	23	418	440	418	440	0.98
13	13	2.8e-05	0.0031	18.6	5.6	1	23	446	469	446	469	0.97

Sequence Information

Coding Sequence: atggaaTCAAAAACACCGTTAGTTGATTCCACAATAAATTCCAAgtatgattatatattgaaCAGCCAAAAAGTGTTAATAATTCCAGTTACAAGATGTGATGATCTGGTCAATCGACCATCTGATATAGTACTTAAACAGGAATATATTCCACCTGCTGACGATCATAATGATGatcaattattacaaattgggaCTGGATGTGAAACCGGAGAAAAAGTAAACATAAATgaaacagaaataaaaatcgaGAATGATTATATCGATGGTATGGTATTTGAAAGTATAGTTTCTCGAAGTCATTCAGATACAAAAGACAAAACTATGTGtagtatttgtaataaaatgtttaccagACACAAtcatttgaaaattcatatGAGGACCCATACTGGAGAAAAACCttttaaatgcaaaatatgtaataaagtaTTTGCTCAGGCAGTGAATTTAAAAGTTCATACAAGAACACACACAGGTGAAAAACCTTTTGAATGCGAAATATGTGATTTTAGAGCTACAACATCGTcttcattaataattcataacagGTTTCATACTGGAAAAAAGCCTTATAATTGTGATGTATGTAACAAAACATTTGTTTCTTCTTCACATATGaatttgcataaaataaaacatacaggAGAAAAACCTTTTAAATGCAGAGTATGCGATAAAGTATTTTCTCAGGCAGGgagtttaaaaatgcattcaaGAACACATACAGGTGAAAAACCTTACAAGTGTGATGTTTGTAACAAATCATTTACTATATCTATTACTTTAAAACGACACAAGAGAACTCATACCGGGGAAAAACCTTTTGAATGCGAAATATGTGATTATAGATTTACAAGATCTTCTTCATTAAAAGTTCATAACAGAAGATTTCATACTGGAAAAAAGCCTTACAGTTGTGATATATGTAACAAAGCATTTGTTACTTCTTCATATTTGAATATGCATAAAATGTTACATACAGgaaaaaaaccttttaaatGCGAAGTATGTGGTAAAGTTTTTTCTCTTGCAATGAATTTAAAAGTTCATACAAGAACACATACAGGTGAAAAACCTTACAAGTgtgttttttgtaataaagcATTTGTTACTTCTTCATGTTTAAATAAGCATACAATGATACATACCggagaaaaacattttaaatgtgacATTTGttctaaaacatttattcataaatgtaatatgaagaaacatattataaatattcatttaaaatctaaacctTATAAGTGTGATGTTTGTAATGAAGCATTTGTTACTTCTTCATGTTTGAATAAGCATAAAATGATACATACCggagaaaaacattttaaatgtgacATTTGttctaaaacatttattcataaatgtaatatgaaGAAGCATATTATGAATGTTCATTTTAAATGA
Protein Sequence: MESKTPLVDSTINSKYDYILNSQKVLIIPVTRCDDLVNRPSDIVLKQEYIPPADDHNDDQLLQIGTGCETGEKVNINETEIKIENDYIDGMVFESIVSRSHSDTKDKTMCSICNKMFTRHNHLKIHMRTHTGEKPFKCKICNKVFAQAVNLKVHTRTHTGEKPFECEICDFRATTSSSLIIHNRFHTGKKPYNCDVCNKTFVSSSHMNLHKIKHTGEKPFKCRVCDKVFSQAGSLKMHSRTHTGEKPYKCDVCNKSFTISITLKRHKRTHTGEKPFECEICDYRFTRSSSLKVHNRRFHTGKKPYSCDICNKAFVTSSYLNMHKMLHTGKKPFKCEVCGKVFSLAMNLKVHTRTHTGEKPYKCVFCNKAFVTSSCLNKHTMIHTGEKHFKCDICSKTFIHKCNMKKHIINIHLKSKPYKCDVCNEAFVTSSCLNKHKMIHTGEKHFKCDICSKTFIHKCNMKKHIMNVHFK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00136307; iTF_00135587;
90% Identity: -
80% Identity: -