Basic Information

Insect: Aphis craccivora
Gene Symbol: -
Assembly: GCA_009835225.1
Location: VUJU01002437.1:14515-16425[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.084 9.4 7.6 0.0 5 23 29 47 27 47 0.92

2 15 2.8e-07 3.1e-05 24.9 1.5 1 23 53 75 53 75 0.99

3 15 1.8e-07 2e-05 25.5 0.6 1 23 81 103 81 103 0.98

4 15 1.8e-07 2.1e-05 25.4 1.0 1 23 109 131 109 131 0.98

5 15 1.8e-07 2e-05 25.5 0.5 1 23 137 159 137 159 0.98

6 15 6.4e-07 7.2e-05 23.7 2.9 1 23 165 187 165 187 0.99

7 15 4.2e-07 4.7e-05 24.3 0.7 1 23 193 215 193 215 0.98

8 15 0.00028 0.031 15.4 3.0 1 23 221 245 221 245 0.98

9 15 4.7e-07 5.3e-05 24.2 1.6 1 23 251 273 251 273 0.99

10 15 1.8e-07 2e-05 25.5 0.5 1 23 279 301 279 301 0.98

11 15 8.3e-07 9.3e-05 23.4 3.7 1 23 307 329 307 329 0.99

12 15 1.8e-07 2e-05 25.5 0.5 1 23 335 357 335 357 0.98

13 15 2.2e-06 0.00025 22.0 2.6 1 23 363 385 363 385 0.99

14 15 1e-07 1.1e-05 26.2 1.0 1 23 391 413 391 413 0.98

15 15 4.4e-07 4.9e-05 24.2 3.0 1 23 419 441 419 441 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.084	9.4	7.6	0.0	5	23	29	47	27	47	0.92
2	15	2.8e-07	3.1e-05	24.9	1.5	1	23	53	75	53	75	0.99
3	15	1.8e-07	2e-05	25.5	0.6	1	23	81	103	81	103	0.98
4	15	1.8e-07	2.1e-05	25.4	1.0	1	23	109	131	109	131	0.98
5	15	1.8e-07	2e-05	25.5	0.5	1	23	137	159	137	159	0.98
6	15	6.4e-07	7.2e-05	23.7	2.9	1	23	165	187	165	187	0.99
7	15	4.2e-07	4.7e-05	24.3	0.7	1	23	193	215	193	215	0.98
8	15	0.00028	0.031	15.4	3.0	1	23	221	245	221	245	0.98
9	15	4.7e-07	5.3e-05	24.2	1.6	1	23	251	273	251	273	0.99
10	15	1.8e-07	2e-05	25.5	0.5	1	23	279	301	279	301	0.98
11	15	8.3e-07	9.3e-05	23.4	3.7	1	23	307	329	307	329	0.99
12	15	1.8e-07	2e-05	25.5	0.5	1	23	335	357	335	357	0.98
13	15	2.2e-06	0.00025	22.0	2.6	1	23	363	385	363	385	0.99
14	15	1e-07	1.1e-05	26.2	1.0	1	23	391	413	391	413	0.98
15	15	4.4e-07	4.9e-05	24.2	3.0	1	23	419	441	419	441	0.96

Sequence Information

Coding Sequence: ATgtttcaggacccaaaaatatatatatttaatagcaaCATATGCGGTAGAATTAAACAGGAAAAAATCCGTACAAGTGATATAATGTGTGATAAATCATTCAATCAGAATAGTATTTTAGCAGCACACCCTCGAACACACATGGGAGAGAAACCATACCAGTGTAATGTTTGTAGAAAATCGTTTGCTCACAGCAATGCACTGGTGGCTCATCAACGAACGCATACGAGAGAAAGACCATACTCGTGTGACGTTTGTAGCAAATCATTCATTACTAATAGTAATCTAATAGTACACCGTCGATTGCACACTGGAGAAAGACCATACTCGTGTGACGTTTGTAGTAAATCATTCATTAACAATAGTAATCTAACAGAACACCGCCGATTGCACACTGGAGAAAGACCATACTCGTGTGACGTTTGTAGTAAATCATTCATTAACAATAGTAATCTAATAGTACACCGTCGATTGCACACTGGAGAAAGACCATACTCGTGTGACGTTTGTAGCAAATCGTTTACTCAAAGCAATCACCTGGTGATCCATCGGCGAACACACACAGGAGAAAGACCATACTCGTGTGACGTTTGTAGTAAATCATTCATTAACAATAGTGATCTAACAGAACACCGTCGATTGCACACTGGAGAAAGACCATACTCGTGTGACGTTTGTAGCAAATCCAAATCGTTTACTCAAAGCAATCACCTGGTGATCCATCGGCGAACACACACAGGAGAAAGACCATACCAGTGTAACGTTTGTAGAAAATCGTTTGCTCATAGCAATGCACTGGTGGTTCATCAACGAACGCATACGAGAGAAAGACCATACTCGTGTGACGTTTGTAGTAAATCATTCATTAACAATAGTAATCTAATAGTACACCGTCGATTGCACACTGGAGAAAGACCATACTCGTGTGACGTTTGTAGCAAATCGTTTACTCAAAGCAATCACCTGGTGACCCATCGGCGAACACACACAGGAGAAAGACCATACTCGTGTGACGTTTGTAGTAAATCATTCATTAACAATAGTAATCTAATAGTACACCGTCGATTGCACACTGGAGAAAGACCATACTCGTGTGACGTTTGTAGAAAATCATTTGCTCACAGAAATAGTCTGATACTTCATCAGCGAACGCACACAGGAGAAAGATCATACTCGTGTGACATTTGTAGCAAATCATTCATTAACAATAGTAATCTAACAGAACACCGCCGATTGCACACTGGAGAAAGACCATACTTATGTGACGTTTGTAACAAATCGTTTACTCAAAGCAATCACCTGGTGACCCATCAGCGAACGCACACGGGAGAAAGACTCATGTGA
Protein Sequence: MFQDPKIYIFNSNICGRIKQEKIRTSDIMCDKSFNQNSILAAHPRTHMGEKPYQCNVCRKSFAHSNALVAHQRTHTRERPYSCDVCSKSFITNSNLIVHRRLHTGERPYSCDVCSKSFINNSNLTEHRRLHTGERPYSCDVCSKSFINNSNLIVHRRLHTGERPYSCDVCSKSFTQSNHLVIHRRTHTGERPYSCDVCSKSFINNSDLTEHRRLHTGERPYSCDVCSKSKSFTQSNHLVIHRRTHTGERPYQCNVCRKSFAHSNALVVHQRTHTRERPYSCDVCSKSFINNSNLIVHRRLHTGERPYSCDVCSKSFTQSNHLVTHRRTHTGERPYSCDVCSKSFINNSNLIVHRRLHTGERPYSCDVCRKSFAHRNSLILHQRTHTGERSYSCDICSKSFINNSNLTEHRRLHTGERPYLCDVCNKSFTQSNHLVTHQRTHTGERLM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -