Basic Information

Insect: Aphis craccivora
Gene Symbol: -
Assembly: GCA_009835225.1
Location: VUJU01001476.1:35580-38461[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.47 53 5.3 0.0 5 22 76 93 75 93 0.92

2 26 6.9e-05 0.0077 17.3 1.4 1 23 98 120 98 120 0.98

3 26 6e-06 0.00068 20.7 2.4 1 23 126 148 126 148 0.97

4 26 3.6e-05 0.004 18.2 1.0 1 23 155 177 155 177 0.96

5 26 0.00019 0.021 16.0 5.9 1 23 183 205 183 205 0.97

6 26 2e-06 0.00023 22.2 1.9 1 23 211 233 211 233 0.98

7 26 2.2e-05 0.0025 18.9 0.4 2 23 240 261 239 261 0.97

8 26 2.6e-05 0.003 18.7 0.6 1 23 267 289 267 289 0.98

9 26 9e-05 0.01 17.0 1.5 1 23 295 317 295 317 0.98

10 26 0.032 3.6 8.9 6.7 1 23 323 346 323 346 0.97

11 26 1.1e-05 0.0012 19.9 1.9 1 23 352 374 352 374 0.98

12 26 1.5e-05 0.0017 19.4 0.5 1 23 381 403 381 403 0.98

13 26 3.9e-05 0.0044 18.1 0.2 1 23 409 431 409 431 0.97

14 26 0.0024 0.27 12.5 2.6 1 23 437 459 437 459 0.97

15 26 1e-05 0.0012 19.9 2.0 1 23 466 488 466 488 0.98

16 26 0.0022 0.25 12.6 2.1 1 23 492 514 492 514 0.98

17 26 0.00025 0.028 15.6 1.7 1 23 520 542 520 542 0.98

18 26 5.2e-05 0.0058 17.7 1.3 1 23 552 574 552 574 0.98

19 26 0.001 0.12 13.6 0.6 1 23 580 602 580 602 0.98

20 26 0.00099 0.11 13.7 3.0 1 23 608 630 608 630 0.96

21 26 1.5e-05 0.0017 19.4 0.6 1 23 636 658 636 658 0.98

22 26 5.2e-06 0.00059 20.9 4.1 1 23 668 690 668 690 0.99

23 26 4.3e-07 4.8e-05 24.3 1.3 1 23 696 718 696 718 0.99

24 26 0.00076 0.085 14.1 3.7 1 23 724 746 724 746 0.97

25 26 0.0099 1.1 10.6 3.2 1 23 752 774 752 774 0.98

26 26 2.7e-06 0.0003 21.8 2.6 1 23 780 802 780 802 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.47	53	5.3	0.0	5	22	76	93	75	93	0.92
2	26	6.9e-05	0.0077	17.3	1.4	1	23	98	120	98	120	0.98
3	26	6e-06	0.00068	20.7	2.4	1	23	126	148	126	148	0.97
4	26	3.6e-05	0.004	18.2	1.0	1	23	155	177	155	177	0.96
5	26	0.00019	0.021	16.0	5.9	1	23	183	205	183	205	0.97
6	26	2e-06	0.00023	22.2	1.9	1	23	211	233	211	233	0.98
7	26	2.2e-05	0.0025	18.9	0.4	2	23	240	261	239	261	0.97
8	26	2.6e-05	0.003	18.7	0.6	1	23	267	289	267	289	0.98
9	26	9e-05	0.01	17.0	1.5	1	23	295	317	295	317	0.98
10	26	0.032	3.6	8.9	6.7	1	23	323	346	323	346	0.97
11	26	1.1e-05	0.0012	19.9	1.9	1	23	352	374	352	374	0.98
12	26	1.5e-05	0.0017	19.4	0.5	1	23	381	403	381	403	0.98
13	26	3.9e-05	0.0044	18.1	0.2	1	23	409	431	409	431	0.97
14	26	0.0024	0.27	12.5	2.6	1	23	437	459	437	459	0.97
15	26	1e-05	0.0012	19.9	2.0	1	23	466	488	466	488	0.98
16	26	0.0022	0.25	12.6	2.1	1	23	492	514	492	514	0.98
17	26	0.00025	0.028	15.6	1.7	1	23	520	542	520	542	0.98
18	26	5.2e-05	0.0058	17.7	1.3	1	23	552	574	552	574	0.98
19	26	0.001	0.12	13.6	0.6	1	23	580	602	580	602	0.98
20	26	0.00099	0.11	13.7	3.0	1	23	608	630	608	630	0.96
21	26	1.5e-05	0.0017	19.4	0.6	1	23	636	658	636	658	0.98
22	26	5.2e-06	0.00059	20.9	4.1	1	23	668	690	668	690	0.99
23	26	4.3e-07	4.8e-05	24.3	1.3	1	23	696	718	696	718	0.99
24	26	0.00076	0.085	14.1	3.7	1	23	724	746	724	746	0.97
25	26	0.0099	1.1	10.6	3.2	1	23	752	774	752	774	0.98
26	26	2.7e-06	0.0003	21.8	2.6	1	23	780	802	780	802	0.98

Sequence Information

Coding Sequence: ATGTGTAGacctaatgaaataaatacaattggtggtgaaattaaaattgaaagagATTTAATCGATGGCTATGAGTTTGAAGGAATAGTTTCTAACAACAGCCATACCTTGGAAATCATTAACTGTATGGAATTGGGAATGAGATCTAACTCAAAGGAAAAAGCTGCAGACAAATTTCAAATCAATAAGCAATTTCACACTGAAAATAATCCTCAGGAacgtaaaatttgtaataaaccaTCAAACGTAAAAACAGATTTGATAAAACATGTTAATACTGGAGAGAATCCCTTCAAATGTGATGTTTGTCAGAGAGCTTTTAAGTTCAAATCAGTTTTGTTAAGACATAAAATGATTCATACAGGTGAAAAGCCCTTCAAATGCAATGTCTGCCATAAAGCTTTTGTTAGATCAACTACCCTAAAGTACCATATGGGGATTCATAATGGAGGAGACAGACCTCACATATGTGACGTgtgtaaaaaatcatttactaTACCAGGTAGATTAAAAAAGCATATGCTAATTCATTCTGATTATAAGCCTTATAAATGCATTATCTGTGATAAGAGATTTCGTCAATCACATCATTTAACAAATCATAATAGAATACATACTGGTGAAAAGCCTTATAAATGTCATGTTTGTGATAAAACATTTGCTTTACCTTCGACTCTGAGATTGCACACGAGACTTCATACTGGAGAAAAGCCCTTACAATGcacaatatgtaattatagatATTCTTCGGCTTCGGCCTTAACAATTCATAAAAGACTTCATACCGGAGAAAAGCCTTTTAAATgtgatatatgtaataaagcatttataattagttcaaGTCTTACATATCATAAAATGATACATAGTGGAGAAAAGCCTTTCAAATGCAACATCtgtttgaaaacatttattagtaaaacaaGTATCACACTTCATATGAGTTCTCATACTGGATATCTGCCTcacaaatgtaatatttgttgtaaatcTTTTGTTTCCATTACAAAATTGAACCATCATATTATGAGACTACACTCTGGAGAAACCCCTTATGAATGTGATATCTGCAATCaatcatttaatacaaaaccaAAGTTGACAACTCACATTATGCATCATTTAGGAAATGACAAACCTTACAAATGCAAGATCTGTATCAAAACATTTGGGACGAATGGAGAACTTAACCGTCATCAATTAGTTCATACGGGAGTAaagcaatataaatgtattgtttgtCCTAAAGCATTTGGTACACCTTACCAACTTAAGTACCATATGATGATTCATAACGGAGATTTTCCTTACAGTTGTgacatgtgtataaaaaaattttcaacacACTCAAGATTGAAAATGCACATGGTTGTTCATTCTGCAAAATATCAGctttataaatgcaatatcTGTGATAAAGGATTTAatcaattgaattatttaaaaatgcataaaatgaGACATGAAAAACCGTTTGAATGCAaactatgtaattttaaatgtatttcatcTTCGGGTCTAAACATTCATAATAGAATTCATACCGGAGAAAAACCCTATGAATGTAACGTATGTCATCAAGcgtatatatcaaaaatatctcTGAATGTACATAAAAAGAAACATGCAATTATTCATCCACAGAATAGACCTTTTAGATGCAACATCTGTAATAAAGCATTTTTGAATGCTACATATTTAAAGACACATACAAGAATACACACTGGTGAAAAACCTTATGAATGCAATCAATGtagttataaaagtatttcatCTGCTGCCTTAAAAATACACAAGAGATCTCATACTGGGGAAAAACCTTATGCATGCAAAATATGtgattataaatgtaacaCATCTTCGTCTTTAATAATGCATAACAGATTTCATACCGGAGAAAGGCCTTATAAATGTGACATATGTGATAAAGCATTTCCTGTTAGTACAActctaaaaatgcataaaaagcTACACTTAAATATTCGTCCTGAAGATAAGCCTTATAAATGCAATGTTTGTGAAAAGACATTTTTCCAAGCTACACATTTAAAGACACATACAAGAATACACACTGGTGAAAAACCTTATAAATGTAAAGTTTGTAATAAAGCCATTAGATCATCTTCTTCTTTACAAATGCACATGAGAACTCATACGGGTGAAAAGCCTTATGCATGTAAtacttgtaattataaatgtactacATCATCcgcattaaaaattcataacagATATCATACTGGTGAAAAGCCTTACGAGTGTAAACTTTGTAACTATAGAGGTTATTCATCTTCGCACTTGTATGCTCATAACAAATCTCATACTGAGCATACGCCTTATGAATGCAATAATTGTTCTAAAACATTTACCAACAAATCAAGTATAAGAACTCATATGAGTTCTCACATTGAATTTCAGTTGTAA
Protein Sequence: MCRPNEINTIGGEIKIERDLIDGYEFEGIVSNNSHTLEIINCMELGMRSNSKEKAADKFQINKQFHTENNPQERKICNKPSNVKTDLIKHVNTGENPFKCDVCQRAFKFKSVLLRHKMIHTGEKPFKCNVCHKAFVRSTTLKYHMGIHNGGDRPHICDVCKKSFTIPGRLKKHMLIHSDYKPYKCIICDKRFRQSHHLTNHNRIHTGEKPYKCHVCDKTFALPSTLRLHTRLHTGEKPLQCTICNYRYSSASALTIHKRLHTGEKPFKCDICNKAFIISSSLTYHKMIHSGEKPFKCNICLKTFISKTSITLHMSSHTGYLPHKCNICCKSFVSITKLNHHIMRLHSGETPYECDICNQSFNTKPKLTTHIMHHLGNDKPYKCKICIKTFGTNGELNRHQLVHTGVKQYKCIVCPKAFGTPYQLKYHMMIHNGDFPYSCDMCIKKFSTHSRLKMHMVVHSAKYQLYKCNICDKGFNQLNYLKMHKMRHEKPFECKLCNFKCISSSGLNIHNRIHTGEKPYECNVCHQAYISKISLNVHKKKHAIIHPQNRPFRCNICNKAFLNATYLKTHTRIHTGEKPYECNQCSYKSISSAALKIHKRSHTGEKPYACKICDYKCNTSSSLIMHNRFHTGERPYKCDICDKAFPVSTTLKMHKKLHLNIRPEDKPYKCNVCEKTFFQATHLKTHTRIHTGEKPYKCKVCNKAIRSSSSLQMHMRTHTGEKPYACNTCNYKCTTSSALKIHNRYHTGEKPYECKLCNYRGYSSSHLYAHNKSHTEHTPYECNNCSKTFTNKSSIRTHMSSHIEFQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -