Acrc009847.1
Basic Information
- Insect
- Aphis craccivora
- Gene Symbol
- -
- Assembly
- GCA_009835225.1
- Location
- VUJU01009764.1:2625-4185[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-06 0.0011 19.4 0.0 9 39 18 48 12 52 0.88 2 2 0.0034 1.9 8.9 0.0 24 39 269 284 268 288 0.84
Sequence Information
- Coding Sequence
- ATGGGCAAAAGATCCTATAGAAATCAGCCAAGTGATGTTATTGAAGAAGTACTAAACAAAATAGTGAATGGGGAAATGTCAATATTAGCTGCAAGAATGCAATATCACATACCATATGGGACACTCTACAATAGATATAATGGTTTACATGGTAATAAACCAGGTGGCCAACCAATACTGAATGAAGCAGAagagaaattattattggcaGCTGTCACCAAATGTGATAAGTCATTTTTAGACAAAAAGGGTATTGTAGTCAAGACATTTAAGAAAAATCTACCAGGTGATAACTGGGCCAGAAGTGTTCTAAAAAGACATCAGATATTGGGTAAACGAATAGCGACAAATATATCAAAGAGCTGCGCTGAAGTGTCACATACAACAatcaacttatattttaataatttggcgACTGTCTTGAAAGATGTCCccagtaaaaaaaagtttctatTTCAACGTGGTATAAAATACCCGGTTCGAGTGCAAAATCATACAAAGAGTGCAACTATAATCATAGTGTGTGGGTATTCTGGTGGTATACTTCTTCCaccatatattGGATCAAGATTTAATTGTACGTCTCATGGATGGATAGAcgcaaatacatttaaatactggttttttacaacatttctACTTCACGCAAAACGTCTAACGGGACGTAAAGTTTTGATTAGTGATAATTTACCTTCACATTTTAATGATGATGTTATAAAGGATGCCCCGTTGGTCGTTTGTTTTTTCCGTCCTTTAAAACAAGCATGGCGTTACACTTTGAATAAatggaaaaacaataatacaagacTTTATGGTATTCCTAAATCTACATTTCCATCTATTGTTCGTGAATGTCTGGAGCATATTAATGATGTAGGATGTATatcagataatttaaaatctggtTTTCGAGCAACAGGAATATATTCAACGATAGACATTGTAACTTCAGCTCTCTTAGGACGCCCTGATAGTGATGGAGACTCACCagataatgttatacaatatgcaAATTCAGAACCAGAAAATGGAATAGAAGATAATGTACCCAAGTATGAAAAACCAaatgatacaaatttaaaaattggaagCTTTTTGTTG
- Protein Sequence
- MGKRSYRNQPSDVIEEVLNKIVNGEMSILAARMQYHIPYGTLYNRYNGLHGNKPGGQPILNEAEEKLLLAAVTKCDKSFLDKKGIVVKTFKKNLPGDNWARSVLKRHQILGKRIATNISKSCAEVSHTTINLYFNNLATVLKDVPSKKKFLFQRGIKYPVRVQNHTKSATIIIVCGYSGGILLPPYIGSRFNCTSHGWIDANTFKYWFFTTFLLHAKRLTGRKVLISDNLPSHFNDDVIKDAPLVVCFFRPLKQAWRYTLNKWKNNNTRLYGIPKSTFPSIVRECLEHINDVGCISDNLKSGFRATGIYSTIDIVTSALLGRPDSDGDSPDNVIQYANSEPENGIEDNVPKYEKPNDTNLKIGSFLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -