Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 4.2e-11 2.4e-08 34.3 0.1 2 42 19 60 18 63 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	4.2e-11	2.4e-08	34.3	0.1	2	42	19	60	18	63	0.86

Coding Sequence: ggtAAAATGGTTAGATCATACGTTAGAAAAACCAAAAAGGGTGATGCATATACCAAAGAAGAACTGTTACAAGCTACAAATGCAATCATAAGCAAACAAATGACCGTCAGCATTGCTGCCAGATTATACCGGATACCAAGAACGACGCTTTACGATCATATAAATGAACGACGTGGAATGAAGTCTACAACTAAGGGTAGAAATACTGCCTTATCACTTGCTGTTGAAAAAAGTTTGGCTCAATCATTAACCATCATGGAAAAGTATGGCCATGGATTAAGTCGAACCGAAGcACATCAGATATACAATGTTGATGAGTCCGGATTTTCTACAGTCCCAACAAAGCAACCCAAAGTCATCTATCCTACCGGTACAAAGCGAGTGGCTAAAGAAGTGACAGCAGAAAGAggtaaaaatgtaacaattgTTTGTGGAGTAAGTGCTATTGGTACTTATATACCACCATTTCTTATTTTTCCTCGAAAAAGATTAAAACCAGAGTTTTTGATTGGAGCAGATTGGAGCACCCACTGCCTTACACCAAACACAATAGATTATGGTACCATCTGCCAATCTGGTCCAAGTACTACTGACGGATTAGAAGTGATTTTTCCTCCTACAATAAGTAAATTCCCGAACCTTCCAGAACTCCCAACagccaaacaaaatattaccaGAAAACCTAGAGCTAAACTACCgtccataataataacatgtactCCTGTAAAAAttaaaaaaaaactatttgtaaaCGGATCTTCTTCTTCTGAAAATGAAGAACCTCAATATGTTATAACCGACAACGAAGATTCAGCAGATGAAGAATGCCTATATTACAATgaaccatttaaaaatgatgtgaTGGGGGAAACATGGATCTGCTGCATAGAGTGTAAGAGATGGGCACATTAA
Protein Sequence: GKMVRSYVRKTKKGDAYTKEELLQATNAIISKQMTVSIAARLYRIPRTTLYDHINERRGMKSTTKGRNTALSLAVEKSLAQSLTIMEKYGHGLSRTEAHQIYNVDESGFSTVPTKQPKVIYPTGTKRVAKEVTAERGKNVTIVCGVSAIGTYIPPFLIFPRKRLKPEFLIGADWSTHCLTPNTIDYGTICQSGPSTTDGLEVIFPPTISKFPNLPELPTAKQNITRKPRAKLPSIIITCTPVKIKKKLFVNGSSSSENEEPQYVITDNEDSADEECLYYNEPFKNDVMGETWICCIECKRWAH

Sequence clustering based on sequence similarity using MMseqs2