Acrc006210.1
Basic Information
- Insect
- Aphis craccivora
- Gene Symbol
- -
- Assembly
- GCA_009835225.1
- Location
- VUJU01009506.1:1726-3834[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.9e-08 2.2e-05 24.8 0.0 5 37 27 59 26 61 0.93 2 2 0.00014 0.08 13.4 0.0 6 38 86 118 85 121 0.93
Sequence Information
- Coding Sequence
- ATGTTTTATTGGATACAAATCCTAGccttagttattacttatcgAGAAAAGCTTATTTTCCAGATGTCGGACATTCCATTAGTGAAAGCTGTGGAAGCTGTTAAAGCCGGATCACTGTCAGCCGGACAGGCTGCCAGGGAGTTTAAAGTTCCGGAAACGACCCTGACGGCGCACCTCACCAAACTTGGGATCGTTGCGGCCGTTGTaagcattGCAAGCAGAGGCTATACAAAAGTTTCCGAAAACCAAAATTCGGCTGCCGCGTTAAATCTGGTTTTGAAAGATGGGGTTGCGGTAAACTTAGCGTCCAGAAAAGCTAACGTGCCAAGGTCGACATTAAGAAAGGCGATTAAAGACCTTGGCAAGATCAAAGAAACATTGTCACTACCAGCAACCTTGGAATCTGGGGCCACAAATGTTGTGACTCGTTTTGAAAACGTCGCTGACACAGTCGTTGTCACTGTAGAGGACCAACGACCGAAGACCgtcattaaaaACGTCATTGTTTTTGGAAAGAATGGCCGAGCCAAGACGGTGACTAGAGAGGTAACGGTGCACACACGGTCAGCGTACAGCGTGCCTCCGCCTGGCATAGTGCATCAACCTCGTGTAACCATCGGATCCCCTGTCGACACTCCGTCCAGCCTGTCTCCGCCTGACAAAGTGCATCAACCTCGTGTAACTATCGGATCTCCTGTCAACAcTCACATTGTATTTACCGATTCATCGGAAGACGACGAACCTGAGTTGCAGTTCGCGGCGGTGGACGGTAATGACGATGCCCTGCTAGTGAAGTCGCCGTTAGCAGTCGACGAAATTTTTACTCCCACACCCCCTCCGACCAACCACGAGGacgtttacaattttattgggAGTGACGATGAAGTCGAGTCATCGCCAATAACAACACCGAATGATGCGTCAACAACACGAACGAATACTGCCGGTTTCGCCAGTACCATCGCGACAGAAAATACCGCCGACGaggacgatgacgacgacgagcTTTTGCTACGGCCGAAGCGCCTCACCGTCGCCGAAAAACTTCTAAATTCTATCGACACACAGCTCGTCAAATACTGCCCCATGTGCGAGTTCATGACGAGTGGACATAAGCTAAACCGccacatacaaaataaacactGGGAACAAATAACTAAGCCTCGTAAAgcgaatataaaaaaaattagcgaTTACATTGCAACCGAATCAAGAAAATCATATTCGGTGGTGCCGATGAGGGCTGTGCAGAAAAAAGTAGGTCCCTACTGGGACGATCGGTGTTTCAGAGGCATCGTCCACGATGCTACGGGGGGGTCATGGAACCTCCCGGGAGTAAGAGACATGCCGGATCCATTTGCCGGTCTCTACAAGGCAGAGAGAGGTGATACAAACATAATCTCTGGACCCGAACCTCGTCCCGAAGTTCCCCTGAATGTACCTCCAATGCGCTTTGTGCAGGGTCCGTCGCGCCCAGTGTCAAATCCGACTCCTAGTTTTCCGAAAGCGACACCGAACCCACAGCGACGCCACTCCGCTGCTTCGATGACCACAGGACGTTGA
- Protein Sequence
- MFYWIQILALVITYREKLIFQMSDIPLVKAVEAVKAGSLSAGQAAREFKVPETTLTAHLTKLGIVAAVVSIASRGYTKVSENQNSAAALNLVLKDGVAVNLASRKANVPRSTLRKAIKDLGKIKETLSLPATLESGATNVVTRFENVADTVVVTVEDQRPKTVIKNVIVFGKNGRAKTVTREVTVHTRSAYSVPPPGIVHQPRVTIGSPVDTPSSLSPPDKVHQPRVTIGSPVNTHIVFTDSSEDDEPELQFAAVDGNDDALLVKSPLAVDEIFTPTPPPTNHEDVYNFIGSDDEVESSPITTPNDASTTRTNTAGFASTIATENTADEDDDDDELLLRPKRLTVAEKLLNSIDTQLVKYCPMCEFMTSGHKLNRHIQNKHWEQITKPRKANIKKISDYIATESRKSYSVVPMRAVQKKVGPYWDDRCFRGIVHDATGGSWNLPGVRDMPDPFAGLYKAERGDTNIISGPEPRPEVPLNVPPMRFVQGPSRPVSNPTPSFPKATPNPQRRHSAASMTTGR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -