Acrc019877.1
Basic Information
- Insect
- Aphis craccivora
- Gene Symbol
- -
- Assembly
- GCA_009835225.1
- Location
- VUJU01005198.1:108-3463[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-05 0.0096 16.3 0.3 2 36 3 35 2 42 0.81 2 2 4.1e-08 2.3e-05 24.7 0.0 2 38 56 93 55 97 0.90
Sequence Information
- Coding Sequence
- atGTCACCTACAAAGATGGAAGCAGCACTTagtgcattaaaatatacatcaatCTCTCAGGCTGCTCGGGAGTTTAAGGTTGCAGAGACGACCCTTCGGCAGCACGCCGCCCGATTAAATATTCAACCTAAAGTCgcTGTCCGTGGATACGTCAGAACTGGCGATAACAAAGCGTTGAAGAAGGCTGTAAAGGCGGTGTTGGCAGAAAAAATGTCAGTAAACCTGAGCAGCAGGGTATTTAACGTGGCTAGGACGACCTTGCGGAAAGAGTTGAAAAAGTTGGCGTGTCAGGGACAGGGGGATTCGGAAAACCCGTCGATAGCAAAAACGAGTACCGCGAGCAAAAAAAGCTCACCAGTGGTAGAACGAACTCTGAAATTAAGCATACCGcttgataaattaatgattattccGACAACGGGACAACAACCGTCGATTGTGAAAAaaacaaCCAAGTTCAACAACGTTCAAGGAAATATAAAAGAGAAGAAGTTGAATACGCATATTCGTTTTTCTGAACCCAAAGACCTGAGCGTTTTTGATTTCACGGAAGAGTCCGAAGAACCACCGTCGCCGTTGCGCATCCGAAAAAGATTAAACGTAACTGAAAGGGTCGAAAGCACCATTAGCCATCGGCTGATAAAATATTGCCCGTTTTGTGCGTTTCAAACCGATGATAACAAAATGACGCGGCACATCGGAACGAAACATTCCGCGAGTATAAGAAAGCCGGTCGACGTCAGCCTGAAGgaaattggtaaaatatttggaTCGGAGTCCAGAAGGTCGGTGACGCTGGTTCCTATGAGAGTAATCAAAGACGAGTTGGGTCCCTACTGGGACGACAAGTCTTATAGAAAAATTTCCTACAGACTTTGCGTCATGGGAAGAATTAAAGTGTACGGTGGGTCGTGGGGTCTTCACAACGTCCCCACAATTGAAGATCCATTTGCCCGGTGGTACCGCTCACCACCCGGTAAAGCACGCAGCTATAGTCCTCCCGCTGATAACCTGTCTCCCGTGGCTGAGCGACCGCCGATACTTCTTGAGACGCCCAAATCCGACGCCAAACACGACGCCAAAGACGACACTTACAAAAAAGTGAGGAAAATCCTGGCAGACAGGGGTTACCAGGACCAATTGCCAAAGGGGCACCCGATCCTGGCGCTTCACGAAAAATACCTAGATTTGGGCCACGAAAAGGACGCTCAGGCTTGTAAAAATTACTTAGCCAATATTTCACGCGTGCTAGCGTTCGTGGCTAATTGGTTAAAGCAGCGGCACTCGCCGCCCCGACATTGGTCGGAATTAATAAGCTGCAGTGAACAGCCATACGTTCTGTACTTCGAGGAgcgAGAAAAATTGGGTCAGACAATTTCAACGacaataaattacctaaaGAACATAAACACTCTTTTAACGCAGTGCATTAGTCTTTACTGTTTCGATGACCCAACATTTCCAAAAAACTTTGACGGAGGACCAAGTGAAAGAGCGGTCAACGGCATCAAATtgttacaacaaaaattacacCTTTTATACTCTAAAAAGATAAAGCAACAGTCCGGGGAACTGTTCAAACGTAAAATAAACGAAGCTGAAGTGCTCCCCCAATACACAGCCATGGAAAAGGTTATTTCGAAAGTGTCGGTGGACGTTGCCGAATTTTTAGAGGATTTGGAGGTGAATGTCGGCACCGCGGGGACGGTTGGCGTGTCGTCAGACAAGCCGTCGACGGCCGCACAAAAATACCTCTGTGGTGTTTGGAGGCGTTTGACGTGCGGTCTGGCGATACGCCTCCTGTGGTCATCTAAAAATCGAAGTGGAGTGGTGACCAACTTCATGATTTCGGAGTGGGAGGCAAGGAGAGTGGTAGGTCAGACCACAGTGGTGACGGTCGCCAATCACAAGACTGGGGATAAAGAGCCGGCCACGATGGTCCTCGAAGGAGATATGGCCGATCACATGGCTCGGTACTACGCACTCCGCAAAACGATTAACACGCCGGTGGAAAACTTCTTTGTGACCAATCGGGGCCAGAGGGTGACTAAATTATACGAAGACGTCAACCGTGTATATGGAGCCCTACTGGGACCCGATTCGGTAACAAAGTTGTCGGCCACAGTCTTCCGGCGGATGATTGAAACGAAGTCTAGAGGTCACCAAGCCGAAGTCGGGCGTGACGTAGCGAGGTGCCTCCAGCACGGCGAGGGTACGGCGTTAAAATTTTATCGTCTACCCGAAGCCAGTGAGGCCATCCGCCGGCAACAAAAACTTAATGTTGTGGATAAAACGGAGCTTTTTGAAGCTGCCGTGATAGAAGAGTGA
- Protein Sequence
- MSPTKMEAALSALKYTSISQAAREFKVAETTLRQHAARLNIQPKVAVRGYVRTGDNKALKKAVKAVLAEKMSVNLSSRVFNVARTTLRKELKKLACQGQGDSENPSIAKTSTASKKSSPVVERTLKLSIPLDKLMIIPTTGQQPSIVKKTTKFNNVQGNIKEKKLNTHIRFSEPKDLSVFDFTEESEEPPSPLRIRKRLNVTERVESTISHRLIKYCPFCAFQTDDNKMTRHIGTKHSASIRKPVDVSLKEIGKIFGSESRRSVTLVPMRVIKDELGPYWDDKSYRKISYRLCVMGRIKVYGGSWGLHNVPTIEDPFARWYRSPPGKARSYSPPADNLSPVAERPPILLETPKSDAKHDAKDDTYKKVRKILADRGYQDQLPKGHPILALHEKYLDLGHEKDAQACKNYLANISRVLAFVANWLKQRHSPPRHWSELISCSEQPYVLYFEEREKLGQTISTTINYLKNINTLLTQCISLYCFDDPTFPKNFDGGPSERAVNGIKLLQQKLHLLYSKKIKQQSGELFKRKINEAEVLPQYTAMEKVISKVSVDVAEFLEDLEVNVGTAGTVGVSSDKPSTAAQKYLCGVWRRLTCGLAIRLLWSSKNRSGVVTNFMISEWEARRVVGQTTVVTVANHKTGDKEPATMVLEGDMADHMARYYALRKTINTPVENFFVTNRGQRVTKLYEDVNRVYGALLGPDSVTKLSATVFRRMIETKSRGHQAEVGRDVARCLQHGEGTALKFYRLPEASEAIRRQQKLNVVDKTELFEAAVIEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -