Acrc014853.1
Basic Information
- Insect
- Aphis craccivora
- Gene Symbol
- -
- Assembly
- GCA_009835225.1
- Location
- VUJU01008794.1:709-4306[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-07 6.3e-05 23.3 0.0 5 37 9 41 8 43 0.94 2 2 3.7e-06 0.0021 18.4 0.0 4 41 63 100 60 103 0.90
Sequence Information
- Coding Sequence
- ATGGGCATAATGTCGGACATTCCATTAAAGAAAGCTGTGGAAGCTGTTAAGGCCGGAACTCTGTCAGCCGGACAAGCTGCCAGGGAGTTTAGAGTTCCGGAAACGACCTTGAGGTCGCACCTCACAAAACTTGGGATCGTTGCGGCCGTTGCATGCAGAGGCTATACGAAAGCTTCTGAGAACCACAATTTGGCTGCCGCGTTAGATCTGGTTTTTAAAGATGGTTATGCTATAAACAAAGCGTCCAGATATGCTAACGTGCCAAGGTCGACGTTAAGAAAGGCGATTAATGATCATGAGAAAATCaaagGAATACTGCCGCCGGCAGCGCCTTTAGCATCTGGCCCGATTGTAGGGGACGTCGCAGTGACTGTAGAAGACGACGCAGGGCCTGTGTTGGACGTCGCGGTCGACGTGGAGGACGCCCAAGCGCCTGTGGAGGACGTCGCACCGCAGACCGTCgtgaaaaacgtcattgtttttaaaaatggccGTGCCAGGACCGTCAAAAGAGAGGTGATTGTACACAAACGTTCGGCTTATAGCGTGCCTTCAATTGGTATTGTGTACCCACTTCGGACACAAGCTGACCTTACTGTCGACAcTCCGTCTAGCCCGTCTCCGCCTGGCAACGTTTCGCCACTTCGTGCGACCAGCGATCCGCCCGTCAACACTCACATTGTATTTGCCGAATCGTCGTCGGACGACGAACCGGAGCTGCAATTTGTTCCGGTGGACGACGATGTCCTGATGGTCAAGTCGCCACTAGCAGTGGACGAAATTTTCACTCCAACACCCCCTCCGACGAAACCCAATGATGTGTACGAGTTCAACGGGAGCGACGATGGTACGCGAGCCGTAACGCTGTACTATTTAtttgtctattttatttttaacgcaATCGCGCTTGTTTCAGAACTCGAGTCAGCGCCACAAGCGCTCAGTCGTACCGATGCGCCGGCGGCAACAGCGGCACGTTCCGTCTCGCCGTTATTCAAGGGCCCGATCGCGTCGGGAGACTCGCAAGGCGGATACGAggaagacgacgacgacgacgagcgTTTACTGCGGCCCAAGCGGCTCACGCTCGTGAAATATTGCCCAATATATGATTTCATGACGTGCGGTCACCAACTCGGCCGCCACATAGAGAATAAACACTGGGACCAGTTGACGAAGCCGCGGAAGGAGAGCGTTAAAAAGATCAACGACTTTATTGCGAACGAATCGCGTAAGTCATATTCCGTTGTGCCCATGAGGGCCGTTAAAAAGAAAGTTGGTCCCTACTGGGACGACCGAAGTTACAGAGAAATCGTCCACGGACTCACAATTATGGGAAGAATGAAATGTTACGGGGAGTCCTGGAACCTCCCGGGCGTCCGAGACATGCCGAATCCTTTCGCCGGTCTCTTCGGGCCGGCGGGAGATGACGCTATCCCCGGACCCGCACCGCTTCCAGAACCGGACACGAAAAATGCAACCCCGTTACGCTATGTAAAGGGTCCGTCGCGGCCAGTCGGTAAGCCGACACCGACATCGCCGAGGCCTCCGACCGGCGGCGCACAGCCCGGAAAACAGTCGCGATTGCGCAAGGCGGCCAGCGGAATGGGGCTGAACCATCAGCTGCCCGTCGACCACCCCTTGATAGCCATGCTTAAGCGTACGCTTGTTTACAGCCACGGGGTGGATTCGGCGGCGGCTACGAATTATGTGGCCAACGTTTCCAGAACGTTAGCGTTCGTGCAGAGGCGTCTTGTCGATAACAAAACTCCTCCTCAACACGGGTCGGCGTTAGTGACCGTCGACGTAGACCTTTACATTGAATACTTTAGACTacGCGAGGAGATCGGGCAGACGAAGGCcacaacaattaattatttaaagaatttgcGGATGTTGTtccacaatataattaattcatacatTCACGAGGACCCCGCCTTTCCAAAGGACTTCGATCTGTCGCCGTGCGTCAAGACGGTCATAGCCATTAAGCTCCTGGACCATAAGCTGGGCCTAGTTTACAAACGGACGACAAAGCAACAGCCGGGAGAGCTATTCTCGAGAAAGACGAGGGAGGCCGAAACCCTGCCCAAGTTCGAGGCGGTCGTCGAGTCGTTGGACAAGATCAAGGGCACGATCAACGGCAATATGAGAACGCTAGAAGACAAGTTTGGAAACTCGGGCAGGGTGAACGTCCGGAGTGAAAAAAACAGCCCGCCGGCGGAGGAGctCTCAAAGTTGTGGCGTCAAGTGACGTGCGCGCTCGTTATCGATATGCTGTGGACCTCGAAACAGCGGAGCGGCGTCGCCGTGGGCATGACCATCGGCGAATGGGAGTCCCGTCGGAGAATCGATACCAGGACTATTATTACGGTATCAGAGCATAAGACCGGGGATAAAGACCCCGCCTCGCTTGTCCTCCAGGAAGACATGGCTGAACTAATGGAGAGGTAG
- Protein Sequence
- MGIMSDIPLKKAVEAVKAGTLSAGQAAREFRVPETTLRSHLTKLGIVAAVACRGYTKASENHNLAAALDLVFKDGYAINKASRYANVPRSTLRKAINDHEKIKGILPPAAPLASGPIVGDVAVTVEDDAGPVLDVAVDVEDAQAPVEDVAPQTVVKNVIVFKNGRARTVKREVIVHKRSAYSVPSIGIVYPLRTQADLTVDTPSSPSPPGNVSPLRATSDPPVNTHIVFAESSSDDEPELQFVPVDDDVLMVKSPLAVDEIFTPTPPPTKPNDVYEFNGSDDGTRAVTLYYLFVYFIFNAIALVSELESAPQALSRTDAPAATAARSVSPLFKGPIASGDSQGGYEEDDDDDERLLRPKRLTLVKYCPIYDFMTCGHQLGRHIENKHWDQLTKPRKESVKKINDFIANESRKSYSVVPMRAVKKKVGPYWDDRSYREIVHGLTIMGRMKCYGESWNLPGVRDMPNPFAGLFGPAGDDAIPGPAPLPEPDTKNATPLRYVKGPSRPVGKPTPTSPRPPTGGAQPGKQSRLRKAASGMGLNHQLPVDHPLIAMLKRTLVYSHGVDSAAATNYVANVSRTLAFVQRRLVDNKTPPQHGSALVTVDVDLYIEYFRLREEIGQTKATTINYLKNLRMLFHNIINSYIHEDPAFPKDFDLSPCVKTVIAIKLLDHKLGLVYKRTTKQQPGELFSRKTREAETLPKFEAVVESLDKIKGTINGNMRTLEDKFGNSGRVNVRSEKNSPPAEELSKLWRQVTCALVIDMLWTSKQRSGVAVGMTIGEWESRRRIDTRTIITVSEHKTGDKDPASLVLQEDMAELMER
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -