Acrc025835.1
Basic Information
- Insect
- Aphis craccivora
- Gene Symbol
- lolal
- Assembly
- GCA_009835225.1
- Location
- VUJU01001996.1:3768-7475[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.4e-17 3.1e-14 53.1 0.0 3 44 206 248 204 249 0.95
Sequence Information
- Coding Sequence
- atgccTGgatctaatctaaaaaaaaacacagatATGCTTTTCAACGAAACACCTTGTCAGCATCCGATAATCATCATCAAAGACATGtcttataatcatttaaaaacattaatagagTTTATGTACTATGGCGAAGTTAACATCTCTCAAGATCAACtcccaattattttaaaagcAGCAGAAAGCTTACAAATAAAAGGGTTGACAGAGAAAACAATGTTTCCCTTTGCTACAACACGACATGCAGAAACTGAATATAGTTTGTTGTCACCCTCagcaaaacgaaaaaaaatgcatCTCATGAAAACATCCAGTGATAAATCTGAACACAATAGTTCTATCGAAGATATTTCAGTAACTGAACAAGATAATATGTCTACTagatCTCAACCTACATCACAAGGACAAGACACATCAAAACCTATTAGTGTAAGCAAACAATCATCTACAGATAATCATACAACAATTGTTCACCACAAACCTGaagGTTGGTCGTTTTTGGAGCAGCTCTCTGATTGCCCACCTCACAGTGTCTACGCCATACCCAAAGCCAAAGCAGTATCCAAACCAGAGAATAAAGTACGCAAAAAACGAGAACCCGGTATACGGGAGAGTGATCGTTTTAAAGAAGCTCTTGAAGCTGTACGTGTGGGCCGTATGGGATTTTGCCGTGCTGCTCAAGAGTATGGGATAAATAACCGTACATTGTGGCtcgagtataaaaaaaaaggttatccCGTTCATCGAAAAGGTCAGTCTTCCTCAACAATTCCAGTACCATCGCCAGCATCAATCAATGGTCAATCATCCGAGCAAGTGTATCAAGCACCACTATACGAACCTTCAACATCTCAAACTTCGGCAGTTGATCATCCTGCTTATGTTTCACAAATGTACTCACAACCTCTGACAggattgttaatTAATAAACGAATTAGGACTCTAGTACGACAACCCCacataaaaatcaatgataGTGATACGAGTACAGatacatcaattattaaaaacgaaacAAGTGATGAATCTGAACCTGTAATCCGGGTGCTTGAGAGGCAGTGTTCAGAGCCAAATCCATCATCAACCAACACACTAGCTATTCCTAAACCAACCATAGTCAAACAACTTTCTCAGCCATCTGAACCTTGTTCAACAGCTAGAGGCTTCTACAACGATGAACTGCCCACTAGTGTATCACAGGTAAACACAAATGATTCTTACAACGGATCAACACGATCTGACCATTGTCCATTGTTACGTTCTGGACCAGCACTTGGATGCAGTTTCTGTTGGAACACAATAGATACCCGTGGAAGGTTCTTGAGACGTAAAACTAAATATCACTGCCCTGAATGCAATATAAACCTTTGTTTGGTTCCTTGTTTTCAggagtttcatgaaaaacaaattcagACAAAATCCACAGATGTTCCTACGATAGAACATCTTCGGAATCAAAAAGTGACAGAAGACACAgcggtttaa
- Protein Sequence
- MPGSNLKKNTDMLFNETPCQHPIIIIKDMSYNHLKTLIEFMYYGEVNISQDQLPIILKAAESLQIKGLTEKTMFPFATTRHAETEYSLLSPSAKRKKMHLMKTSSDKSEHNSSIEDISVTEQDNMSTRSQPTSQGQDTSKPISVSKQSSTDNHTTIVHHKPEGWSFLEQLSDCPPHSVYAIPKAKAVSKPENKVRKKREPGIRESDRFKEALEAVRVGRMGFCRAAQEYGINNRTLWLEYKKKGYPVHRKGQSSSTIPVPSPASINGQSSEQVYQAPLYEPSTSQTSAVDHPAYVSQMYSQPLTGLLINKRIRTLVRQPHIKINDSDTSTDTSIIKNETSDESEPVIRVLERQCSEPNPSSTNTLAIPKPTIVKQLSQPSEPCSTARGFYNDELPTSVSQVNTNDSYNGSTRSDHCPLLRSGPALGCSFCWNTIDTRGRFLRRKTKYHCPECNINLCLVPCFQEFHEKQIQTKSTDVPTIEHLRNQKVTEDTAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00134638;
- 90% Identity
- iTF_00134638;
- 80% Identity
- iTF_00134638;