Aaph002093.1
Basic Information
- Insect
- Aphidoletes aphidimyza
- Gene Symbol
- znf711
- Assembly
- GCA_030463065.1
- Location
- CM059996.1:25472954-25484307[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.5 1.9e+02 2.9 0.3 5 23 14 32 10 32 0.89 2 13 0.024 1.3 9.7 0.3 2 19 557 574 556 576 0.95 3 13 0.19 10 6.9 2.2 1 23 594 617 594 617 0.95 4 13 9.3 5.2e+02 1.6 0.1 1 20 622 641 622 646 0.85 5 13 7.3 4e+02 1.9 0.1 5 23 665 684 662 684 0.77 6 13 0.0022 0.12 13.0 0.2 1 21 689 709 689 710 0.97 7 13 0.068 3.8 8.3 1.4 2 23 842 862 841 862 0.90 8 13 4.1e-06 0.00023 21.6 2.7 1 23 868 891 868 891 0.98 9 13 0.021 1.2 9.9 5.1 3 20 923 940 921 943 0.94 10 13 0.18 10 6.9 0.1 1 23 952 976 952 976 0.95 11 13 0.011 0.63 10.7 2.3 1 23 982 1007 982 1007 0.95 12 13 5.2e-05 0.0029 18.1 4.4 1 23 1014 1036 1014 1036 0.99 13 13 0.00069 0.038 14.6 0.7 1 21 1042 1062 1042 1067 0.92
Sequence Information
- Coding Sequence
- ATGCTTGAAGATCTGGACGAAGATACGCATTTGTGCATCAAATGCAGCCGCACAATTGTCGGTTTGGAAAGTTATATTCGCCATAGGAGAAGTCATTGTAGCAAAAGTGTTTCGTCCACCGAATCACTGAACCGTGAAATAATCGGCACTAATCATTCATATCGATCTTTCGAATTCACTGAACCGCCATCTGTTAAGCATGATAAGCAGTTTAACTTTAATTATGATATGGAACCCGTACATCCCGGCCATGAAGATTCACACGACGACGTTGTGCCAAATGCAGGCATATTGCCATCGCCAATGCATCAATCGGAAAAAGTTAACGACTACAAAGCCGATCCGAATAAATCGCTTTCCGAAAGTTATGATTATAGCTATGGTCTTGGCGCGGATGTCTTTTTCTCGTCTCTTAATCTGCAAAGTAGTTCGAAATCGAAAACACAAAGTGTTGCAACGACTGTTACCGTTGAAGGAGTCGCTTCATCATTATTGAAAAGCACCGATAAAATTTTGCAGAAAAAGCAATCAGATTCGGGCAGCTTAACACATACTGAACACATGGACGATTGGATCAACACGGGTGCTTCGACCAGCGGAACTGATAAACTTATGAAAGCCGTAAATGCTATcagtggaacaaaaaaaatggcatatgACTTGCCTCAATATGCCACATTCGAATACGATGAAGATGATGACGACGAAATGGTTGAGGTTGAGGACTTGGTTGAAGATGATGTGCCACCACATACGCATACAGGTGGAAAATGGAAACCCTCCGAAAGGAACCACCATTCAATGCATACAACATCACGATGGTATGAACGATGGGACATTCCTGaagaaaacaatcaattgCCCTTAACTTCAGCGGCATCACACGATGAACTAGTTGAAAATTATCCACCGCCCAGCCATACACGCGGAAAATGGGTTCCTGGAActaaaatcattaaattagATTACAAACGGCATGACTCTGAAACTTTTTCCGAACAGTTTTGGTGTAGATCTTGCAATCGTCGGCTATCGTCTCGGATAGTTTATGAGAGGCAtcttttatcaaaattacATACAAAACGTTCTCAACCCGAAAACGAATTGGAGCAAGCTCCTTTGCCTTTGCCAAGTATTGAGGAGATTGTTGGAAACAAGTGTTCCGTATATGCGGAAAAACAGTCGAGGCGAAAGCGTAATCGGAAGGATGCTCTTGAGTTTATAAAAGAGGCCccattgaatgaaacaagaaaGCGAAGACGACGATTTAATTATATCAAATGTGGTGTATGCAATACCCGATTGAAAACCGTTGTTTATGGCAAACACTTAATATCACACTATCACTATCGGCGCATGTTTAAAAAGCCAACGGAATCATATGAAACGATTCTGGATAACATTCACCGTATCATACTTCAATCGCCTTATCAATGCCAATCCTGTCGATTTTATGCAAACACTGAGGAAATGTTCTTACGTCATTGGGATTCTACTGATCATTTACAGCGTGTTTTGGGCAATGGGACattttggtgtgtattttGCAAATTTACTTGCCATACAAATGACGAGATGCGCTGCCATTTAATTGGAAAAGATCATCAGCAGGTTGTCAACGCTATAAATCGCTCTGTCCCGATCATAATTCGCAAGAAAATACCCATAACATGTGACGAGTGTCATGAAGAATTTTCGCTCAACATCGAACTACGAAAacattcttcattttgttcagCAAAAGCATTGGGTACAGCATCTGACCGATATCAATCCAAACATTATTGTTCAACGTGTAACGAATATTTCcaatcaattgtttcatttcaacgaCATGCCACAACTGTCCATTCGAAAAAATCATACTTTTGTGGTCCGTGCGAGCTGTCATTTTCAGAATTAGATGCTGCTAAACGCCATCGCGTATCGGCtgaacataaaatcaaagCGGCACGtataaaagcaacaaaaactcTAAAACGTAAATGCATTGTGTGCGGAGAAATGCAAGACGATTTACTTCTACTCAAGAAGCATTTAAGGATCGCTCATCCAGAACATAGTTACTCGTGTTACTTTTGtggccaaaaattcattttaccaCAAGAATTGAGTCGACATATTCGAGACAAAGTATGTAAAACAGATGGCAAGAGTCAAACCGAAGATGCGTGTAGTGAGATTCTTGTAACAAACTTATTAGAGCTACCAATAATAACTGATATTGCGCCAGACCAAGAAGTGACAAAATTAATCGTTGCATCTCATAACCATCCATCAATATCATCAGTAGACGATACAGCTGAATCTCCAGTTGAAGacaattatttgattattgGACATGAAAAGGAGTTAAACTTAGGAGAAACctcacaaatgaaaaatcaaacggACCATCCAACTGAAGCTgaacattcgattttatggGGATGTAAACAATGCGATTTCCGAACACCTACTGAAGCGGAGTGTATTTTCCACGAGATGCTACATAAATGGAACATTTGCAACGACAATAAAATTCCATGTCCGATATGCAATCGAACATTTGGAAAGAATTCTCTTCGATGTCACTTGCGATTGCATACAAACGAACgtatttttaaatgtgatcACTGCGAACTGAAATTTACGCGTAAAGCCAACCTTAAAGAGCACATCCAacgcattcatttgaaaaagatAATTTCAAAGAAGCAGCCATCGATGAACCGATTGAGCCGAAAAAGTTCATCGTCGCCACAGAATAATGAGCAATTGTTTGGTTGTTCCATGTGTGAAAAAAGATTTCGGAAAAAGAGTTTGCTCGAACAACACTTGCATTGCCATCGCGAGATGGTGGTTGTCAGAGTATTTGACTGCCCTGAAAAGGATTGCCTATTTAGTGGAAGAAGTGCTGCTGAGCTTCGCGTTCATCAAAGTATTCACtcgaatgagaaaaattttTGCTGTACGATAGGAAACTGTgaatacaaaaccaaaactaaTGCGCTACTGAACAGgCATATCAAGTCACAACACCAAAATGATTccgttcattttcaatgtccTCATTGTGAATTTAGCACAAAAATCTCGAGCCACTTGAAACGACACATTCGGATACATTCCGGTGACAAGCCGTATGCATGTCCACATTGCAGCTATGTTTCAAATAATCCGGAAAATTTGCGGAAACATGTAATTAAAAGCAATAAACATCCCGGCCGATATCTGTACGAATGCAAGTTGTGCACTAATGAAGATCAACCATTCGCTACCAATAACACAAAGGAGTACAAATGCCACCTTGTATCTGTTCATAAGGAAAAGAAATAG
- Protein Sequence
- MLEDLDEDTHLCIKCSRTIVGLESYIRHRRSHCSKSVSSTESLNREIIGTNHSYRSFEFTEPPSVKHDKQFNFNYDMEPVHPGHEDSHDDVVPNAGILPSPMHQSEKVNDYKADPNKSLSESYDYSYGLGADVFFSSLNLQSSSKSKTQSVATTVTVEGVASSLLKSTDKILQKKQSDSGSLTHTEHMDDWINTGASTSGTDKLMKAVNAISGTKKMAYDLPQYATFEYDEDDDDEMVEVEDLVEDDVPPHTHTGGKWKPSERNHHSMHTTSRWYERWDIPEENNQLPLTSAASHDELVENYPPPSHTRGKWVPGTKIIKLDYKRHDSETFSEQFWCRSCNRRLSSRIVYERHLLSKLHTKRSQPENELEQAPLPLPSIEEIVGNKCSVYAEKQSRRKRNRKDALEFIKEAPLNETRKRRRRFNYIKCGVCNTRLKTVVYGKHLISHYHYRRMFKKPTESYETILDNIHRIILQSPYQCQSCRFYANTEEMFLRHWDSTDHLQRVLGNGTFWCVFCKFTCHTNDEMRCHLIGKDHQQVVNAINRSVPIIIRKKIPITCDECHEEFSLNIELRKHSSFCSAKALGTASDRYQSKHYCSTCNEYFQSIVSFQRHATTVHSKKSYFCGPCELSFSELDAAKRHRVSAEHKIKAARIKATKTLKRKCIVCGEMQDDLLLLKKHLRIAHPEHSYSCYFCGQKFILPQELSRHIRDKVCKTDGKSQTEDACSEILVTNLLELPIITDIAPDQEVTKLIVASHNHPSISSVDDTAESPVEDNYLIIGHEKELNLGETSQMKNQTDHPTEAEHSILWGCKQCDFRTPTEAECIFHEMLHKWNICNDNKIPCPICNRTFGKNSLRCHLRLHTNERIFKCDHCELKFTRKANLKEHIQRIHLKKIISKKQPSMNRLSRKSSSSPQNNEQLFGCSMCEKRFRKKSLLEQHLHCHREMVVVRVFDCPEKDCLFSGRSAAELRVHQSIHSNEKNFCCTIGNCEYKTKTNALLNRHIKSQHQNDSVHFQCPHCEFSTKISSHLKRHIRIHSGDKPYACPHCSYVSNNPENLRKHVIKSNKHPGRYLYECKLCTNEDQPFATNNTKEYKCHLVSVHKEKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -