Aaph011507.1
Basic Information
- Insect
- Aphidoletes aphidimyza
- Gene Symbol
- -
- Assembly
- GCA_030463065.1
- Location
- CM059998.1:30222173-30224857[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 5.4 3e+02 2.3 0.9 2 22 340 362 339 364 0.81 2 9 0.025 1.4 9.7 2.3 1 23 396 418 396 418 0.97 3 9 0.00062 0.035 14.7 1.6 1 23 426 448 426 448 0.97 4 9 0.0002 0.011 16.3 0.5 1 23 457 480 457 480 0.95 5 9 6.3e-05 0.0035 17.8 2.4 2 23 490 512 490 512 0.97 6 9 0.039 2.1 9.1 1.5 2 23 521 542 520 542 0.96 7 9 8.1e-05 0.0045 17.5 1.3 1 23 547 570 547 570 0.98 8 9 3.7e-05 0.0021 18.6 0.4 1 23 576 598 576 598 0.97 9 9 1.7e-05 0.00095 19.6 3.2 1 23 604 627 604 627 0.98
Sequence Information
- Coding Sequence
- atgacaacaaaaaagaaagaagtgTGCCGGTTATGCTATTACGAAACAATCGATACTACCGATATATTCAGTGAAGATGGAATCTCATTCAACTATATCAGTAAAATCAATAAGTATTTGTACTTTTCGGTATCCGAAAATGATGAACTACCCAAAACAGTATGCTGGATGTGTACACAGCATTTGgaaacatttcataaattctATGAAAAGataaatgaaatccaaaagCAGCGATTGACAACAAACATGTATGAAAGTATAATTTTACAGCCTCAATATGATTTAAAAGTTCAAACACCACTTGCTGATCGAAATGAGGAGAAAAAATCGGATGTGCtcattgatgatgatggtAATACATTCGAAATTGTTGTAATATCCGatgattttgaagaaaaaacagcCGAAGTGGATAatgaatttgaagaatttgaattgttggaGGTTGACCATATGGATTCGATCACTGACCCTCAAGAGGCTAAAGATGAGACAACTAGTGACATTCAAACGCATCATTCACCTGCCATCGATGCAATGGATGTCCATTCAATTGACTCGTTGAccgttgaaaatgaagaaaacgttgaaaatatagaaaatacagcgaaaaaagaaaaaatatcaaatcaaaccaatttGCGACGCAATCAAAAGCCAAACATTAAAGTCGAAATCCAAAGCACAAGAAAAAGTGCACGTCAAGCAGCCAAATTACAAAAATCCGTACAAATGTTTAAAcgtgaaaagagaaaaagtgagTCAGTTGTAGTGAAACGAAATCCAATGACGATGAAAACCAGAGAGACTTATGACATTGAAGAGATGCAAGTCGATTGTGATGAAATCGCTGAAGGTGAAAGTGATAATGAATTTCCGGCTAGAGATTCGGACAATGAAGACTGGCCATCGCAGGAGACGCTGGACGAATTTCCCAAGCAAATTATGAAAGATGGTTTGCTTTTGATCAAAGGCAAAGAGCTTATGTCTATGATTTGCAGATTTTACAATTTGGAATGCAAACAATGcgagaaaaaacaaagatTCAAaaaattaaatgaacttTTTGAACACTATGGAAATATCCACGATGAACCGGGCTATGTGGAATGCTGCCAGACAAAACTCTCTCGTTATCCAGCCATTATAATGCATATGGCACGACATTTACAACCAGACGCATTCAAGTGCGATGAATGTGGTTACATTGTGACGCGGCCACGATTCCTCCAATGTCATAAACTTACTCATTTACCTGATGATCAAAAACCTTTTGCATGCACAGAATGCTCACGGCGATTTTGCTGGAAGAGTGCACTTCGCATTCATATGATTTCCCATCAACCGGCCAGTGAGCGTCGTCAATATATTTGCCATGTGTGTGACCGAACGTACGACACACCGGGTGGATTATCAACGCACAAAAAGCTTGCTCACAGTGGTGCAAAACCGTCACAATCAAATGTATGTCACATTTGtgcaaaaactttttcaaCACGTACTGGCCTACATGAGCATATGCTAACGATACATCAGCCGCGAGAAAAAGGTCAATTGCAATGCACCGAATGCGGTAAATGGTTAATGAATAGTCGATGTTTGAAAACGCACATGATTTTACACAGTGATGCTGAATTCCGTTGTGATCAATGTGATTATgtgacaaagaaaaaagtacTATTAAATCGTCATCTATTGACACAGCACTCGACAACACGACCGTTCGTCTGTAATTTATGTGGAcgtgattttaaaatgaagcgTTCATTAACGGTGCACATCGCTCAACATggttcaacacaaaaatatcaatgtcCATTCTGTGATCGTACATTTAATAGTTCCACCAATTTTTATACACATCGAAAGAGTTTGCATCCAAAAGAGCTAGAGGAAATGAAACAGCGTGAAGAGGATGAACGCCGACGAAAGAGAATTGAGGCTGGTGTTGAGGAAGACACAACATTTCATGTAACCGAAATTCGTGATACACAATTAATTTTAACAACAGACACTGGCGAAGAGTACACCGTTTTagaaataacataa
- Protein Sequence
- MTTKKKEVCRLCYYETIDTTDIFSEDGISFNYISKINKYLYFSVSENDELPKTVCWMCTQHLETFHKFYEKINEIQKQRLTTNMYESIILQPQYDLKVQTPLADRNEEKKSDVLIDDDGNTFEIVVISDDFEEKTAEVDNEFEEFELLEVDHMDSITDPQEAKDETTSDIQTHHSPAIDAMDVHSIDSLTVENEENVENIENTAKKEKISNQTNLRRNQKPNIKVEIQSTRKSARQAAKLQKSVQMFKREKRKSESVVVKRNPMTMKTRETYDIEEMQVDCDEIAEGESDNEFPARDSDNEDWPSQETLDEFPKQIMKDGLLLIKGKELMSMICRFYNLECKQCEKKQRFKKLNELFEHYGNIHDEPGYVECCQTKLSRYPAIIMHMARHLQPDAFKCDECGYIVTRPRFLQCHKLTHLPDDQKPFACTECSRRFCWKSALRIHMISHQPASERRQYICHVCDRTYDTPGGLSTHKKLAHSGAKPSQSNVCHICAKTFSTRTGLHEHMLTIHQPREKGQLQCTECGKWLMNSRCLKTHMILHSDAEFRCDQCDYVTKKKVLLNRHLLTQHSTTRPFVCNLCGRDFKMKRSLTVHIAQHGSTQKYQCPFCDRTFNSSTNFYTHRKSLHPKELEEMKQREEDERRRKRIEAGVEEDTTFHVTEIRDTQLILTTDTGEEYTVLEIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -