Aaph008583.1
Basic Information
- Insect
- Aphidoletes aphidimyza
- Gene Symbol
- -
- Assembly
- GCA_030463065.1
- Location
- CM059997.1:45887492-45889988[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.7 4.9e+02 1.7 0.4 1 16 51 66 51 68 0.87 2 13 0.41 23 5.8 0.1 2 23 192 214 191 214 0.95 3 13 0.0014 0.077 13.6 1.7 1 23 247 269 247 269 0.98 4 13 0.00023 0.013 16.1 2.3 2 21 281 300 280 302 0.94 5 13 0.0021 0.12 13.0 0.4 3 23 323 344 321 344 0.94 6 13 0.0031 0.17 12.5 3.4 1 23 377 399 377 399 0.98 7 13 1.4e-05 0.00078 19.9 1.1 1 23 407 430 407 430 0.93 8 13 0.0029 0.16 12.6 3.1 1 23 437 460 437 460 0.95 9 13 2.5e-05 0.0014 19.1 0.5 2 23 468 489 467 489 0.96 10 13 7.7 4.3e+02 1.8 0.5 2 23 501 522 500 522 0.69 11 13 0.049 2.7 8.8 0.6 2 23 528 550 528 550 0.97 12 13 0.054 3 8.6 3.0 1 23 555 577 555 577 0.92 13 13 2.9e-05 0.0016 18.9 1.1 1 23 583 606 583 606 0.98
Sequence Information
- Coding Sequence
- ATGGCAACCACAAATTCATGCCGTCTGTGCTTGACGATGAGTGATGATCACTTGAACGTGTTCAGTGTGATTGGCATTGAACTAAATTTGTGTGCAATTATCAGCgagcattttaaatgtgaaGTCAGTGATACAGATCCTTTACCAAATTTTGTGTGCCAAACATGCtgggcaacaacaaaaaccttCCACGAATTGTATCAACGATCGAAAAAGGTGCAGGAAACTTTTCTTAATCAACgcattaaaatcgaatatgatACCAATGAGTTGTGGCTTGAAAACATTGAACGCGAAACTCCTGAACAATGTATTAGCGAATTTAAAGATGAACCGTATTTAGaatttgCAACCACTTTCGATGAACAAATGACTTATGATGATTCATACGAAACTTCTTATGCCGGGTCAAATGGAAATCTCAAGGATGGTTCAGAGTTGAGCCAAAATAATGAGAGCGCTGGTGGTGATGAAGAGGCGTCAAAACCTTACATCAAGCGAAAGCGAGTTGCGAAACAACGAAAAAGTGATTTTGAACAGCTATTTTCGGAGAATAAGCATCGATTCGACATGTCTTGTGATTCGTGTCCAACATTGTTTGATACGCTCGATGAGGCTCGAAATCATTATGCCACCTTGCATAACAATTCCAAAGGATACATCAAATGCTGCAATGTGAAACTAATTTATCGATGCAAAGTAATAAAACATCTGTATCGACATTTGGACCCTGAAAAATTCAAATGTGATGAATGTGGGAAAACGTACATGGCACTTCATGTTCtcaaagcacacaaaaaatcacataaaagAGATCCATATGCCGAAAAGGAGCTGGTTGAGTGTGATATTTGCAAGAAGGCCTTTACCTCGAAGCTATATTTAAAGAAACATATTCAATGCCATACAGACAAATCGGAAGATGAACAATACAGAAAGTTTATCACCGATAATTTCGATATGAATTGTGACCAATGCGATGTTGTGTTTACCACATTCTATGATGCTCGGCGTCATTATCGTGATTTACACAATGAGAAAAAAGGCTATATTAAATGCTGTGATAcgaaattgaacgaattttgGCTGGTTGTCGATCACATCAACTCCCATCTAAATCCACAGGTTTACAGTTGTGAATTGTGTAGCAAAACCTATGCAGATCGAAAGAAATTTTATCTCCACAAAAGAAGGCACAAACAAGCGATTGCCGAGCCATTTATCTGTGATTATTGTGGCAAAGCATTTCGAAACAAGGAAACAATTACACGGCATTTATTCAATAATCATGTGCAATCTGAGCCCAAATTCGAATGTGAAACATGCCATAAACGCTTCCAATTATTATCTTTATTGAGAAATCATTATTATTCGGTGCATCGAGAGAAAAAGGCGAATGTGACGTGTGAATTTTGCGGAAAATCATTTAATGTCAAAGCAAACTTTGATAAACATATGGTGTCGCATGTTGAAAAATCAGAGCGATTGGCGCAACGAAAACAGTGCGAACATTGTGGTGAATGGCTTATGACCAAGAGTGGAATTTATTATCATGAGCAGATTCATACCAGCGGAGTCAGGAAGTGTGATCAATGTCAATTGGAATTGCCGCATAAACTTGCATTGTTGGCACACATTCGTAAATATCATCGTAAACCGAAAcacaaatgccatttttgcgaaaaaacatttgaaatcggTTCAAAACTAAGAGAACATGAAGAAGGCCACACAAGACATAATGTATATCCATgtgaatattgctcaaaagTGTTTACTGTTCAAAGTTCAAGACAGACACATGTCAGACGTAATCATCGCGATGAATTGGAACAAAGGAAACAAATGAGAAAGGCACTTTTACTTCCACCATAG
- Protein Sequence
- MATTNSCRLCLTMSDDHLNVFSVIGIELNLCAIISEHFKCEVSDTDPLPNFVCQTCWATTKTFHELYQRSKKVQETFLNQRIKIEYDTNELWLENIERETPEQCISEFKDEPYLEFATTFDEQMTYDDSYETSYAGSNGNLKDGSELSQNNESAGGDEEASKPYIKRKRVAKQRKSDFEQLFSENKHRFDMSCDSCPTLFDTLDEARNHYATLHNNSKGYIKCCNVKLIYRCKVIKHLYRHLDPEKFKCDECGKTYMALHVLKAHKKSHKRDPYAEKELVECDICKKAFTSKLYLKKHIQCHTDKSEDEQYRKFITDNFDMNCDQCDVVFTTFYDARRHYRDLHNEKKGYIKCCDTKLNEFWLVVDHINSHLNPQVYSCELCSKTYADRKKFYLHKRRHKQAIAEPFICDYCGKAFRNKETITRHLFNNHVQSEPKFECETCHKRFQLLSLLRNHYYSVHREKKANVTCEFCGKSFNVKANFDKHMVSHVEKSERLAQRKQCEHCGEWLMTKSGIYYHEQIHTSGVRKCDQCQLELPHKLALLAHIRKYHRKPKHKCHFCEKTFEIGSKLREHEEGHTRHNVYPCEYCSKVFTVQSSRQTHVRRNHRDELEQRKQMRKALLLPP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -