Basic Information

Insect: Aphidoletes aphidimyza
Gene Symbol: SCRT1
Assembly: GCA_030463065.1
Location: CM059997.1:27980488-27988380[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 2.8e-07 1.5e-05 25.3 1.6 1 23 495 517 495 517 0.99

2 5 0.0079 0.44 11.2 0.1 2 23 527 548 526 548 0.97

3 5 2e-05 0.0011 19.4 0.4 1 23 552 574 552 574 0.97

4 5 6.8e-08 3.8e-06 27.2 0.6 3 23 582 602 580 602 0.98

5 5 0.00015 0.0081 16.7 1.8 1 21 608 628 608 629 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	2.8e-07	1.5e-05	25.3	1.6	1	23	495	517	495	517	0.99
2	5	0.0079	0.44	11.2	0.1	2	23	527	548	526	548	0.97
3	5	2e-05	0.0011	19.4	0.4	1	23	552	574	552	574	0.97
4	5	6.8e-08	3.8e-06	27.2	0.6	3	23	582	602	580	602	0.98
5	5	0.00015	0.0081	16.7	1.8	1	21	608	628	608	629	0.94

Sequence Information

Coding Sequence: atgcCTCGTTGTTTAATGGCAAAAAAGTGGAAAGCTTATCCGTGGCAAGATCGTGCTGAGAATACCgtaacaaatcaacaaatcacCGAAATTACCGACACGGTAGTGATCACTACCGCATCGAATATTGAAACAATCACCGCTTCTGCCATTGAAGAGGACGAAGAAATTGACGTGGTGGGCGATTCACCAGCCACTCAAGCAACATCGTCTGTGGTTAATAGCTACACCACGAATCTTGACACACAACAGCACACCAATTCAACGGTAATTGTTGGCAAAACATCCGCGATACCGACTTGCTGGGGTCCATCGTCACCCACCGCTGGTACAACTGCCGAAGAAGCGCATTCATCTGAAGGAGCTACGCGAGGTGCAACGATTTTATATAACGGTTACGGGCAAGATATTTCGATGCATTTCACCGCATATTTGCCGCGCATGGAACACGAATTGGCTGTCACATCGAAATCTGATAATCAGCCAACAACAATTAACACAAACAGTAGCCCGCATTCAAATCAAGCGTCTGTCATTCCAACAGGTGAATATTgccagcagcaacagcagcagcagcaacaacaacaacaacaacagcaagaaccacaacaacagcaacagcaacaacagaagAATCTAGCCATGCCAATTGTAACGATTCAGCATCCGTTGCAACGGAAATCGTTGTCAATGTGCTTCACAAGCACCGGGGCCACATTGTCACTTCCTCCAAAGAAGAAGGATATCTATCGACCATACTCGCTTGACGATAAACCATCGCAACGGCCTTATGGTCTACGAATACCAGCCGAAGAAGATTTGCATGCTGCTCATGCCATTTTGGATTTAAGTGCATCAACTGCTTTTCTGCCACCGCGCAATTTACAGCAAGaacatcagcagcagcagcagcagcagcagccccCACATACTATGCGAACAGTCGCCACAACCGCCGCCGTTGCAACTGTTGCCACAGTTGCCACCGAACCGAATCAAAGTCAACATCAATCGATGCACAACGTGGAAATGCATCAGCGCAAAGCGGCAGTTTCGCCCCACTTGACCGTACCTGATGAAGAATGTTATAAAAAGCAATCGACCAATGTGCTGATAaaccaaaatgtaaaatacagCAATACAAAAGCGAATCAAACGgatgcaaacattcaaaatgagaacaacaacaatttgacaAATGTTCTTATGAAATCGAAAACCGCTCCAGTGACTGCCACCAAACCCATTGATCGATCGAAACAGCGTACGCTGGATACCgtcaataacaataatactaatagcaacagcaacagcaacaatgacACCGACAACCATGATGAACACAGTGAATCAAGCAATTCGAGAACGGTTGCGTACACGTATGAAGCGTTCTTTGTAAGTGATGGCCGGTCAAAACGGAAATCGAATCCGGATGGCATGGGATCAAACGAAGTGCTCAATGCAATcgataataaatcaaaatacacGTGCACTGAATGCGGCAAACAATATGCAACATCGAGCAATTTGTCgagacacaaacaaacacatcgcAGCTTGGATTCACAATCGGCCAAAAAGTGTATGACATGCGGAAAAGCCTACGTTTCGATGCCGGCACTGGCGATGCACGTCCTCACGCACAAATTGTCGCATAGCTGTGGCGTTTGTGGTAAGCTATTTTCGCGTCCATGGCTGCTGCAAGGCCATTTACGATCGCACACTGGCGAAAAACCATATGGCTGTGCCCACTGTGGCAAAGCATTTGCCGATCGCTCGAATCTGCGTGCCCACATGCAAACCCATTCAGCCGATAAGAATTTCGAATGCCAACGATGTCACAAAACATTCGCACTCAAATCGTATTTGAATAAGCATTTGGAATCATCATGCTTTAGCCATGAGAATGATGCTAATGGAACTGTTGCGCCGAATGCATTGGCCATTTCCACCGACGATAATTCATCGAATGGCAGCAATGCCAATGCATTGCATTGA
Protein Sequence: MPRCLMAKKWKAYPWQDRAENTVTNQQITEITDTVVITTASNIETITASAIEEDEEIDVVGDSPATQATSSVVNSYTTNLDTQQHTNSTVIVGKTSAIPTCWGPSSPTAGTTAEEAHSSEGATRGATILYNGYGQDISMHFTAYLPRMEHELAVTSKSDNQPTTINTNSSPHSNQASVIPTGEYCQQQQQQQQQQQQQQQEPQQQQQQQQKNLAMPIVTIQHPLQRKSLSMCFTSTGATLSLPPKKKDIYRPYSLDDKPSQRPYGLRIPAEEDLHAAHAILDLSASTAFLPPRNLQQEHQQQQQQQQPPHTMRTVATTAAVATVATVATEPNQSQHQSMHNVEMHQRKAAVSPHLTVPDEECYKKQSTNVLINQNVKYSNTKANQTDANIQNENNNNLTNVLMKSKTAPVTATKPIDRSKQRTLDTVNNNNTNSNSNSNNDTDNHDEHSESSNSRTVAYTYEAFFVSDGRSKRKSNPDGMGSNEVLNAIDNKSKYTCTECGKQYATSSNLSRHKQTHRSLDSQSAKKCMTCGKAYVSMPALAMHVLTHKLSHSCGVCGKLFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSADKNFECQRCHKTFALKSYLNKHLESSCFSHENDANGTVAPNALAISTDDNSSNGSNANALH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -