Aaph017252.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphidoletes aphidimyza
Gene Symbol
ZIPIC
Assembly
GCA_030463065.1
Location
CM059999.1:41368049-41373217[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 8.1e-07 4.5e-05 23.8 1.0 1 23 363 385 363 385 0.99
2 9 1.3e-06 7.4e-05 23.1 3.8 1 23 391 413 391 413 0.99
3 9 3.4 1.9e+02 3.0 0.1 1 16 419 434 419 436 0.83
4 9 0.00013 0.0073 16.8 7.4 1 23 728 750 728 750 0.99
5 9 6.8e-06 0.00038 20.9 4.5 1 23 756 778 756 778 0.99
6 9 0.63 35 5.3 0.7 1 20 784 803 784 805 0.91
7 9 1.3e-05 0.00072 20.0 1.8 1 23 811 833 811 833 0.99
8 9 2.5e-05 0.0014 19.1 1.7 1 23 839 861 839 861 0.99
9 9 0.00039 0.022 15.3 5.8 1 23 924 947 924 947 0.98

Sequence Information

Coding Sequence
ATGGACAACAATTGGCTTGAAGTACTCGAAACCTTTTGGCTGCGGATCACAAACGATACTAGAGTGTCGCTGAAACTGGTGCAGAGAGACTTTCAAAGCAAACATTTCTCATTCGACGACAAATTCAAGGAATATTTCCTTCAGACAACCAACTCACGAATTGCTTTAATATTTGAAGAGTTTGTCAATAATTCATTGGTCGGAGAACAGTTTTCACTCGGTTCTCATTCTACCAACAACGACATAGACTTTCGATTGCAAAATGATGGGGCGAAAGAGAGGACTACGACAAAGGAGTGGTTAAATCAATCACCTCATCAGCCAGATCAGAGCTCTGTTGCATTACAAACATCAattgtgaatcaaatgaacCACACGGCGGTCGGATCAAATGACAGCATCTCTTTTTGTCAATGCGGCGCAAGAGACTGCCAGGAATCAACGAGCCTCTCTTTCACTGCCAATCAAAACACCAAACGATTTCGTGAACGATACGGAGAGCAGCTCGTAAGCGTAGACATTGTAACCAGTTTGAACCAGTTAAATCCACTGCCAGGTGGACTTGATTACAACAacgaatcatttcaatttgtggaGTCAAAATGCATCGATTCCAATGAAATTACGTCTTTAATTAGAGCAAAACTTGGTTATGGATCCTTGTTGGCGGCTCAGACCAACGATGATCACATCAAAAAAGAATGGGATTCAATTGAAGATAGTTCAAGTGTTGATGCTTCAGCAAATGGACCACAGACCAACAATCAAGAGGTGACGACGCATGATTATGAAGATCTGAGCTTAGCCGATCAAATGATATCGGTCAATGAGAATCGAAAACCAACTGAAGAGCGGAGGTGTTCAATTGAACGTGGGATTGAAATAGTCAGGCAGGTGACCGCAGATGGTGGACATTTCACTGAACAATGTTccacaaataaacgaaaacatGCTTATAACACCGATGGTTTGCCACAGAAAAAAAGTCGAGCACATAAACGGAAAAATCCCAATAAATCGCCTAGAGGAAACTtgaacaaaaagcaaaaattggCAACCGATTCGAATGAACTCAAGAGTaagcaattcaaatgtgaaaactGTGACTATGTTACTTCGCGTAAGGGAAATTTGAACCAACACATGCTAACACACTCCGATGAAAAGCCGTTCAAATGCGAAATGTGTGCAAAAGGATTCACTCGGAAGGAATATCTCAACCATCACATGAGAACCCACGCcaatcaatttccatttcaatgtttaatttgTCGTCAAGGATTTTCACTTGAGCAGACGCTGAAAATTGAAATTCGCTTGCAAATTGAACGGGAAGTGGAGGAAATGGAAGCGGTCATTGAGCGTGGAGCAACATCGTCATTGAAGCGGATCAATCGATGCTTTGAATCGTCAGGCCAGTCACTTGACGAAGATTTCAGGCAATACATTCTACGAATCTCGAATGACAGATTGTCAGCCACCTACACCAAGGtacaaatggaaattaaatggGGCAAAAATCAACAGATCGATGACAGCAACGATCAGATGCTGGTTGGTGGCTTGACCGATGAACCGCTGGCTCAGCCTAGAAATAGTTTGGAAGGTGTCGATTTGTTGGAGAGTCACCGCGGTATGACATTTGACTTCGACATAAACAGACTCCAAAATGGCTCAGGCAATTCGACTTCAGtgaaaaatgaaaggaCAAACTCAATCGATAACACAGTGAATGTGAAATCAGAAGTGGATGCAACTCAGTTCGATGCCGTGGTTGAAATATTCGATTCAAGTGACGAGGAAAACATCGATGAGGCGATTGGTACACACTCACGAGACATCAAATCCGAACGGGAAGAAGGTGCAAATGTGGTAAATGGTAAAACTGAtgccaatgaaaatcaatcgaatgcaCCAATGAATCGTAACAACAACGAAGTCAGTGTCAAAGAAGAGCTCGATATTGAACCGAAACAAGAAGTTTTGGACGAAGCCATTCCAATAAGAATCTTTAACCCAAACAACGTCTCTTTGAATGGTGGATACAGTTCAAATAATGATGCCGCAGGTGGAAATGGTGCTGGATCATCTTTGCCACGTAAAAGGTGTGGCACAGAGACAGGAAGGGTAAGCGATGAAACACTTGCTCCGAAGCCATCCTGTTCAAAAGATGCAAAGCGATACAAATGTCAACATTGTGATTATGGAACTGATCACAAAGGACATCTCAATCGGCATTTGCGGACGCACACCAAAGAAAGACCTTATCGGTGCAGCCATTGTGCTAAATGCTTTGCAGATCCATCGACCCTCAACAGACACGAGAAGACGCATAAAGATGAATTTCCGTTCCATTGCTCGAATTGTTTCCGTGGATTCTTccaaaacgatgaaaaagaGGCTCATGAAATGATCTGCACATATCGCCGCTATGAATGCTTCATTTGTAAATATACCACCATCAATAAGACAAGTTTGGTCAGACACATGCGGACGCACAGTGGAAAGAAGCCATATCGATGCAGTCGTTGCTATAAAGGATTCACAACATTGTGGAATCTCAATCTACACATGACAACTCACAAAGACAGAAAGCTTCCATTCCATTGTAAAGGCTGTTTCCGTCAATTTCTACGGAAATGTGAAATGCAAGACCATGAAAGAAGATATCGAAATCGTCGCTATGAATGTCATCTCTGCAAGAAATTTATCACTGTTATGAAAACTAAGATGGAAATTCATATGCGCAGTCATTCGGGTGAAAAACCTTTCCGCTGCGAGATTTgcatgaaatgtttcaatgaaaaaaaccaCCTTAAGCGACACTTGAACACCGTTCACAGCAGACGCATCTAA
Protein Sequence
MDNNWLEVLETFWLRITNDTRVSLKLVQRDFQSKHFSFDDKFKEYFLQTTNSRIALIFEEFVNNSLVGEQFSLGSHSTNNDIDFRLQNDGAKERTTTKEWLNQSPHQPDQSSVALQTSIVNQMNHTAVGSNDSISFCQCGARDCQESTSLSFTANQNTKRFRERYGEQLVSVDIVTSLNQLNPLPGGLDYNNESFQFVESKCIDSNEITSLIRAKLGYGSLLAAQTNDDHIKKEWDSIEDSSSVDASANGPQTNNQEVTTHDYEDLSLADQMISVNENRKPTEERRCSIERGIEIVRQVTADGGHFTEQCSTNKRKHAYNTDGLPQKKSRAHKRKNPNKSPRGNLNKKQKLATDSNELKSKQFKCENCDYVTSRKGNLNQHMLTHSDEKPFKCEMCAKGFTRKEYLNHHMRTHANQFPFQCLICRQGFSLEQTLKIEIRLQIEREVEEMEAVIERGATSSLKRINRCFESSGQSLDEDFRQYILRISNDRLSATYTKVQMEIKWGKNQQIDDSNDQMLVGGLTDEPLAQPRNSLEGVDLLESHRGMTFDFDINRLQNGSGNSTSVKNERTNSIDNTVNVKSEVDATQFDAVVEIFDSSDEENIDEAIGTHSRDIKSEREEGANVVNGKTDANENQSNAPMNRNNNEVSVKEELDIEPKQEVLDEAIPIRIFNPNNVSLNGGYSSNNDAAGGNGAGSSLPRKRCGTETGRVSDETLAPKPSCSKDAKRYKCQHCDYGTDHKGHLNRHLRTHTKERPYRCSHCAKCFADPSTLNRHEKTHKDEFPFHCSNCFRGFFQNDEKEAHEMICTYRRYECFICKYTTINKTSLVRHMRTHSGKKPYRCSRCYKGFTTLWNLNLHMTTHKDRKLPFHCKGCFRQFLRKCEMQDHERRYRNRRYECHLCKKFITVMKTKMEIHMRSHSGEKPFRCEICMKCFNEKNHLKRHLNTVHSRRI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-