Aaph004888.1
Basic Information
- Insect
- Aphidoletes aphidimyza
- Gene Symbol
- -
- Assembly
- GCA_030463065.1
- Location
- CM059996.1:51270515-51272924[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.1 1.2e+02 3.6 0.2 1 23 8 30 8 30 0.92 2 14 0.0035 0.2 12.3 0.1 2 23 209 231 208 231 0.91 3 14 0.15 8.5 7.2 1.9 3 23 255 276 255 276 0.97 4 14 0.17 9.6 7.0 1.8 1 21 283 303 283 304 0.94 5 14 0.00063 0.035 14.7 0.1 2 23 315 337 314 337 0.92 6 14 0.24 13 6.6 0.2 3 20 345 362 343 363 0.89 7 14 0.00021 0.012 16.2 2.0 3 23 382 403 380 403 0.96 8 14 3.3 1.8e+02 3.0 3.5 1 19 410 428 410 431 0.93 9 14 0.00044 0.024 15.2 0.5 1 23 442 465 442 465 0.90 10 14 4.9 2.7e+02 2.5 0.1 3 10 473 480 471 484 0.88 11 14 9.5e-06 0.00053 20.4 1.6 1 23 508 531 508 531 0.98 12 14 0.01 0.57 10.9 4.4 1 21 538 558 538 559 0.95 13 14 0.0063 0.35 11.5 2.2 3 23 572 593 571 593 0.96 14 14 0.00054 0.03 14.9 0.1 2 23 630 652 629 652 0.90
Sequence Information
- Coding Sequence
- ATGACTGAAACCAGAGCAGTTCACGAATGCTTATTTTGTCCACTGCAATTTGACAGTTCCGCAGCAAAAGATGACCACATCTTAGAGCATTTTGCTCGTGAAACCTGTACagaatgcaatcaaaatttgattcaaatcggCGGACGATTGTATACGCTGCACGACAAAACAACATGCATCAATAGAACTTTGAAGACAGAGGGGCATTTTGAATCTGGCTACTGTGATTCGTCGTCAACTTCACGAAAAATGAGTCAACACGAAAATGACGAAGAGATAAAAAGTGAAATCCACAGTGAAGGGGATTTTTTGTGGTCTGAGACACAAACAATCTCAGAACAAATCACCTATTCTGACCCAGATACCGTTTTGGAAAAACCATATCGTATTGACGGTGAAACTCACTTGATTGAATTACCAAAAGTGGAAGAAAACTCTGATATACCCGAAGAAGAGATGGATCCGGTGTGTGCAAATGCATatcaaataaaagaagaaccaattcaattccaCGAAGAGCTAATCATCAAAATAGACggttcaaatattcaaagcGAGAATCAATCGTTTCCCATTCAAGAAAATGAGCATAACATCCTTGAAACTAGTACAGAAACACATATTCCGTGCGATATTTGTGGGCAGAAACTGGCGAACGAAGATTTGCTGAAAAagcataaaattttattacacAGTTCACAGgaaacaatcaaatataaaGTTCGAATGCGAAAGTCTGAAAAATCCAACGAAAAGCCGTGGTGTGATTTATGCAACAAAATCTTTAAATCGGATAAAATTCGCCAAAAACACATGCGAATGCAGCATGATCAAAGTATAAAGAAATTCAAGTGTGAGCTGTGTCATGTGTTATTCATGAGAGAGATTTCGCTTCAAAATCATGTGTGCAAACAAAGGAAAACTACCAAATCAGTTCCAATGCCATGCGACATATGTGGCAAAATATTGGGCAATAAAGATTCACTtcgaaaacataaaattctaTTACACAGTTCATCAGAGACGATTTTTTGCAAGGTATGTGGTCGATTATTCCAACATTCTGAGGAATTGGAACCGCATCAGTCTGATTGTGCTCTTAAACTGCGTcttcgaaaatcgaaaaaatcgggtgatttgttttgtgatttatgCAAAACCGAGTTTAGCACGGATGATAGTTTTCGCAAGCACATGCGAATGAAGCATGatccaaatattgaaaaattcaagtgTAAATTGTGTTGCGCTGTATTCATGAAAGAATCATCTTTACAAGCGCACAATTGTCGAAAATTAACTGAATCTGGTGAAAAAGTCATATTTCCGTGTGATTTTTGCGGAAAAGAGCTTAGCAATCGAGATTCACTTCGAACGCATACAGTTTTATTCCATAGCCCACCAGGCACGATATTTTGCAATGTTTGTGGTAAATTATTTGCGGAAATTAATAAACGTGACATTCATAGGACAGaatgtttaatgaaaaataaattgcgaaAACTTAAGGCATATGGTGAGTTTGAATGTgatatatgtaaaaaaaaggtgaCAAGAAAAGCTGATATTCGTCGGCACATGAGACGGAAACATGATCCATCTgtagaaaatttcaaatgcaaacgatgtaattttgtttttatgaaaGAATCATCACTCCAGTCTCACCAGTGTAAGGATAAGTCAGCTAAGGGTAAATCCGAAGAACCAATGTGTGATATTTGTGGAAAAATACTGAGCTGCAATAGTTCACTTCGAAagcatcaaattaaattccataGTCCGTCAGACACAATTTATTGCCGTGCttgcattaaaatatttccCAGTATTGAGGAACTCAACACACACCAACCACAATGCCTTTTGAAGAGATACGTTCAACAGCCATGTGATGTATGCGGAAGAGTACTTGCCAACAGTAGTTCACTtagaaatcataaaattgcattgcataGTCCACCAGGAACCATTTTCTATCCAAAAAATAGTTTTCTTGCAAAGCATAAGACTTATGCCATAAGTACAGCGGAATGA
- Protein Sequence
- MTETRAVHECLFCPLQFDSSAAKDDHILEHFARETCTECNQNLIQIGGRLYTLHDKTTCINRTLKTEGHFESGYCDSSSTSRKMSQHENDEEIKSEIHSEGDFLWSETQTISEQITYSDPDTVLEKPYRIDGETHLIELPKVEENSDIPEEEMDPVCANAYQIKEEPIQFHEELIIKIDGSNIQSENQSFPIQENEHNILETSTETHIPCDICGQKLANEDLLKKHKILLHSSQETIKYKVRMRKSEKSNEKPWCDLCNKIFKSDKIRQKHMRMQHDQSIKKFKCELCHVLFMREISLQNHVCKQRKTTKSVPMPCDICGKILGNKDSLRKHKILLHSSSETIFCKVCGRLFQHSEELEPHQSDCALKLRLRKSKKSGDLFCDLCKTEFSTDDSFRKHMRMKHDPNIEKFKCKLCCAVFMKESSLQAHNCRKLTESGEKVIFPCDFCGKELSNRDSLRTHTVLFHSPPGTIFCNVCGKLFAEINKRDIHRTECLMKNKLRKLKAYGEFECDICKKKVTRKADIRRHMRRKHDPSVENFKCKRCNFVFMKESSLQSHQCKDKSAKGKSEEPMCDICGKILSCNSSLRKHQIKFHSPSDTIYCRACIKIFPSIEELNTHQPQCLLKRYVQQPCDVCGRVLANSSSLRNHKIALHSPPGTIFYPKNSFLAKHKTYAISTAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -