Aaph013671.1
Basic Information
- Insect
- Aphidoletes aphidimyza
- Gene Symbol
- -
- Assembly
- GCA_030463065.1
- Location
- CM059999.1:11723188-11725305[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 8.7 4.8e+02 1.7 1.2 5 23 50 68 47 68 0.91 2 15 0.00018 0.0099 16.4 0.3 1 23 173 195 173 195 0.97 3 15 0.081 4.5 8.1 1.5 3 23 203 224 202 224 0.97 4 15 1.7 95 3.9 0.4 1 23 279 302 279 302 0.93 5 15 0.023 1.3 9.8 0.7 1 19 354 372 354 374 0.96 6 15 0.00046 0.026 15.1 0.7 1 23 381 404 381 404 0.95 7 15 0.0022 0.12 13.0 4.0 1 23 433 455 433 455 0.98 8 15 0.00023 0.013 16.1 0.9 2 23 460 481 459 481 0.96 9 15 0.00099 0.055 14.1 3.8 1 23 489 512 489 512 0.96 10 15 0.0063 0.35 11.5 2.7 2 21 530 549 529 551 0.94 11 15 0.0017 0.095 13.3 3.6 1 23 558 581 558 581 0.95 12 15 0.77 43 5.0 0.5 1 13 588 600 588 602 0.84 13 15 0.0026 0.14 12.8 1.2 1 23 615 638 615 638 0.97 14 15 0.001 0.055 14.1 2.6 1 23 643 665 643 665 0.99 15 15 0.023 1.3 9.8 1.7 2 23 672 694 671 694 0.95
Sequence Information
- Coding Sequence
- atgtatcaaatcgAAAGTGTTTTCATTGGTGAATGCCAGCCGGACAGTGCAGTGGTGAAGTCTGAAATCCAGATTCAAACTATTGATAATCATAAAGTTGGTGATGTAACAAGATTGGCTCCAAACAATTTTGCACTAAACTGCATACGATGCtcgcaaacatttcaacattttccgGAGTTTACATTGCACATCGAAGAGCATTTTGTGCAAAgtgatgttttcattttaccaaacacaaatgaaactgATCTAAGAAATGGtgttaaattcaatgatgCAACTCCAGATGAGTTGGGCAAAAAGAGTCCATTCGACATTGAATATGAACCCGAAgataatattgaatatattggTTGTTTCAAAAAAGAATGCACTGACCAATCGATTGAATGTGAATCGGGTGCCAGCAATATTAATAGCGATGTCAGCCAACAAATGACTGAAGAATATGAACCTACTTTCGATTCATCCAAATTGATTCAAGGTGTAACTTATAAACAGGTCGCAAATAAATTCGAGTGCCTAATTTGTGGCGTCAAATGTGCATCGAAAAATAATCTCAAAATACATTTGGCCGTTCACAAGACcgttaaaaatgtattttgtcaGATTTGCATGAAAGGATTTAGTACAGTGCATTATGCTCAGAAGCACATTAAatcaatacacaaacaaacaatatcaaCGACAGAGATAAGAAAAGCCCAaacaacattaaaacaaattgtcaaaccaaaaaaatcggatCGAAATGGCAGCCAAGCCGATGAATTGGCCAAGGTCAAACTGAACGTACTCAGTTCAAATTACTGGCGAACTGAAGGTAAAAAATATCACTGTTTGCTGTGCGTTCAGTGGTTTGCCGTTCCAAAGTATGTTCAGAAGCACATTCGTTTGGTTCACGGTCGTCATTTGCCAATTGATGAAATATTAGCATCACAAATTCAACCAGAATTAAAACCAGAATCAACTAAATCCgttgaaatggtgaaacaacaacaaatccagTCGCTACAAAGAGAGCAAGCCAGCGATGCAAGTAAACGAGTAAAATCTTTTGAATGCTTTGTGTGCCATACAATGTTTGTACAGGAAAAAGCGTTGCGATATCACTTTCCATTGCACGAGGGTATACAATATGCGTGTCCGCTGTGCGACAAATACTTTTCTATGCAAAAATATGTACGTGATCACATGATTTACAGGCATGGTTTTgataaaaaatcgaaattaccACCACTGAAAACGCGAGAAATTGAGAATTTTGAGTATCACAAGCCGGTGGTGTCAAGATTTGAATGCTATCTGTGCCATCGAACGTACCCATCGAAAAGTAAATTAGTTTCGCACTTCAAGAGTCATATCGACATCATAGAGTGCAGTATTTgcaccaaaatatttaaaagcaGTGAATCGAGGAGACGACACTTGCAATTACATTCCGCTGATCCAAGTCAATTGCATCATTGTTTAATTTGCAATAAAGCATTTGCCGTTAGACGATATATGATGAGTCATATGCGCACAAGTCATAGAAatccgaaaacaaaaatcgaaaaaccaCCAAAAGATAAAGCGATTCTGACCTGCGAAATATGCCAGAAAGTGTTTGACAAACAAGGCAGATACAATAAGCATATCAAATGTCATAACAAGGAACCTGCCCGGTATATGTGCGATTGTTGTGGCCAAGAGTTTGAAAATCGACATAATCTCAGAAAACATCTGTCTTCGGCGCACAAAATTAGTAAGAAATactttaaatgcaatttatgcCATAAAGTTGTACCGAAAAAACGCGAAGAAGAGCATCTTAAATTCCATAAAGGTGAAAAAGATCACCAATGCGAAATCTGTGGCAGTCAATATGTTACAGAGGGCCTTTTGAATACGCATAAAAAGCGCCAACATGCTGGCCTCAAATATGAGTGTGATGTTTGCACAAGTCGCTTCGATCAACCGAAAAAACTTCTTCATCATCGCCGTTCACATCCCGAACCAATGGGAATCCATTGCAGCGTCTGCAATCTTGGCTTCTTTAACATCAGATCCCttaataaacatgaaatgacaaaacacGCACATCAAGAAATCACATTCGATAGCGATAGTTAG
- Protein Sequence
- MYQIESVFIGECQPDSAVVKSEIQIQTIDNHKVGDVTRLAPNNFALNCIRCSQTFQHFPEFTLHIEEHFVQSDVFILPNTNETDLRNGVKFNDATPDELGKKSPFDIEYEPEDNIEYIGCFKKECTDQSIECESGASNINSDVSQQMTEEYEPTFDSSKLIQGVTYKQVANKFECLICGVKCASKNNLKIHLAVHKTVKNVFCQICMKGFSTVHYAQKHIKSIHKQTISTTEIRKAQTTLKQIVKPKKSDRNGSQADELAKVKLNVLSSNYWRTEGKKYHCLLCVQWFAVPKYVQKHIRLVHGRHLPIDEILASQIQPELKPESTKSVEMVKQQQIQSLQREQASDASKRVKSFECFVCHTMFVQEKALRYHFPLHEGIQYACPLCDKYFSMQKYVRDHMIYRHGFDKKSKLPPLKTREIENFEYHKPVVSRFECYLCHRTYPSKSKLVSHFKSHIDIIECSICTKIFKSSESRRRHLQLHSADPSQLHHCLICNKAFAVRRYMMSHMRTSHRNPKTKIEKPPKDKAILTCEICQKVFDKQGRYNKHIKCHNKEPARYMCDCCGQEFENRHNLRKHLSSAHKISKKYFKCNLCHKVVPKKREEEHLKFHKGEKDHQCEICGSQYVTEGLLNTHKKRQHAGLKYECDVCTSRFDQPKKLLHHRRSHPEPMGIHCSVCNLGFFNIRSLNKHEMTKHAHQEITFDSDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -