Aaph004202.1
Basic Information
- Insect
- Aphidoletes aphidimyza
- Gene Symbol
- -
- Assembly
- GCA_030463065.1
- Location
- CM059996.1:45572738-45577600[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00013 0.0072 16.9 4.2 2 23 98 119 97 119 0.94 2 11 0.00016 0.0091 16.5 1.4 1 23 126 149 126 149 0.97 3 11 2.1 1.2e+02 3.6 0.2 2 21 164 182 163 185 0.69 4 11 7e-05 0.0039 17.7 0.4 2 23 198 219 197 219 0.97 5 11 1.3 75 4.2 0.8 2 23 228 249 227 249 0.96 6 11 0.0067 0.37 11.5 1.3 2 23 255 277 254 277 0.96 7 11 0.0034 0.19 12.4 0.1 1 17 282 298 282 298 0.93 8 11 0.0066 0.36 11.5 0.3 2 23 499 520 498 520 0.97 9 11 0.085 4.7 8.0 0.7 2 23 526 548 525 548 0.90 10 11 1.6e-05 0.00089 19.7 2.9 1 23 553 575 553 575 0.98 11 11 1.9e-06 0.0001 22.6 3.4 1 23 581 604 581 604 0.98
Sequence Information
- Coding Sequence
- ATGGTTTTGCAGCTAAGAGCACGAATGATTGAAGCAATTTACAGTAAATCATCAACGAATGGTGGAACCGATACGGAAACTAACGAATCTGATGCACCGTCCGATTCTGAATATGATTCTATTGGTTATAGTGAGGAAAAAATCATTGGACTTCAAATTGATCTGATTGAAGCAAGTTTACCAGAAGATGGTGCAGAGGAAGAATTGGAGTCCGGGATACAGAAAACCAATCCCACGACACGGAAACGAAAACGGGCTCGAAGATCCAAAATTCGAACCGTTGAACAGATTGTCTGTTTCATGTGCCATAAATCGTTCAAAAGTTTCGATAATTTGCGACGGCATTACTTTCAACATGATCCAAAATCTCGAATCTTTAAGTGTGATCAGTGCGATAGTCGATTTTCACGTGGTTATCTATTGagaaatcacataaaatacGTTCATTTGTATCCTGGAAAATATTTGGGGAGTGGACACAGACGAACCACTTGTCCTGTATGCCATAAAGAGCTTGCATATGCCAGTGTCAAAGCGCACATtgcaaaaatgcatgaaaagaaaacactgCGCAAAAAACTAGACAAATTGAAGTGTACGGTGTGTCGAAAAGAGTTTCGAGGTCCATATTTGCTAGCGCAACATGAAAGGACACATATCGACCGGAAATTGACCGAAGTGCAATGTGATGTGTGTGAAAAATGGGTAAAAAATCGTCACATTCTCAGTATGCATATGTCAACGCATAATCCAACAGCGAAAAAGTGTCCAcattgtaataaaatgaaatcatcaaatcGATCATTAATTGAACATATTTCGATTGCGCATTCAAGTATGAAACATCGATGTAAGGAATGTGGAAAAGCTTATGCTCGACCAAAAGCACTGCGGTTTGTTTACATCCAAACGATAAGCAGTTTGAATCGCGTTTCATGGATCATGGCGTGTTTATTTTGCTCAAGATATACAAACGATGGAATTCCAATCTCTGGAGATTCTGCGGTTGCTGAAAATGCACGGAATATTACCCTCAagcatttttggtttgacATAACTGAAATAAACTCCACCGATAGCTATGCATGCTTCGATTGCTGGtcaaaagtggaaaaatttcatgaattttatgtCATGGTTGAAAAtatccatacaaaatgttcaatcaaaGAAGAAGTGTCTGAGGTAGTGATGGAAGAAGTGACACCAGTGAATCCATTGTCAACTTGGGAAGATACACTATTTGCAAATGAAGATAGTTTCAATCATATTGAAAACTACTCATCAAATTCTGATACTGAAGCAATCAACGCACAAACATTgacttttttgaatgaatcaataaaacatGAAGACGATCACAAAGAACAAATAAACTCAGTAGCTCCAAAACAATTCGCTCGTTCTAGCAAGGCAACCATAGCTAAACAATATTCAGATTTATCCTCGTCATCCAAGCCATATGGATCGTCATATCGGGAGCAGTCTCAAGTACAATGTGATATTTGTGGTAAATGgtcaaaaaatataaatacactTCGGGCGCATAAACGGATGCATGAACGTTCACCGAAAAAGTGTCCACATTGTGATAAGGTGAAATTTACGGTGAGAGCATTGAATGCTCATATTACACTTGTTCATTCGGCTGGAACACATCAATGCACCTATTGTGATAAATCATTTAGTAGACTACAAAGACTGAGGGAGCACGTTGCAACGCATACCGGTGAATCATTGTACACTTGTAATTATTGTAGCAGAACTTTTAAGAGtgcatcaaacaaaattaagcATATGAAAACACAGCATTCGGAACAGTATAATGCCGATCGAGCTAAgagaaatcaaaaatga
- Protein Sequence
- MVLQLRARMIEAIYSKSSTNGGTDTETNESDAPSDSEYDSIGYSEEKIIGLQIDLIEASLPEDGAEEELESGIQKTNPTTRKRKRARRSKIRTVEQIVCFMCHKSFKSFDNLRRHYFQHDPKSRIFKCDQCDSRFSRGYLLRNHIKYVHLYPGKYLGSGHRRTTCPVCHKELAYASVKAHIAKMHEKKTLRKKLDKLKCTVCRKEFRGPYLLAQHERTHIDRKLTEVQCDVCEKWVKNRHILSMHMSTHNPTAKKCPHCNKMKSSNRSLIEHISIAHSSMKHRCKECGKAYARPKALRFVYIQTISSLNRVSWIMACLFCSRYTNDGIPISGDSAVAENARNITLKHFWFDITEINSTDSYACFDCWSKVEKFHEFYVMVENIHTKCSIKEEVSEVVMEEVTPVNPLSTWEDTLFANEDSFNHIENYSSNSDTEAINAQTLTFLNESIKHEDDHKEQINSVAPKQFARSSKATIAKQYSDLSSSSKPYGSSYREQSQVQCDICGKWSKNINTLRAHKRMHERSPKKCPHCDKVKFTVRALNAHITLVHSAGTHQCTYCDKSFSRLQRLREHVATHTGESLYTCNYCSRTFKSASNKIKHMKTQHSEQYNADRAKRNQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -