Aaph013891.1
Basic Information
- Insect
- Aphidoletes aphidimyza
- Gene Symbol
- -
- Assembly
- GCA_030463065.1
- Location
- CM059999.1:13655436-13657162[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.17 9.2 7.1 1.2 1 23 177 199 177 199 0.96 2 11 0.047 2.6 8.8 0.4 1 21 205 225 205 226 0.93 3 11 0.0068 0.38 11.4 0.1 2 23 231 253 230 253 0.91 4 11 1.5 82 4.1 1.0 1 23 259 282 259 282 0.93 5 11 8.4e-05 0.0047 17.5 0.4 1 23 293 315 293 315 0.96 6 11 0.001 0.056 14.1 5.7 1 20 321 340 321 343 0.91 7 11 0.00015 0.0082 16.7 0.2 2 23 349 370 348 370 0.96 8 11 7.5e-05 0.0042 17.6 2.4 1 23 375 397 375 397 0.99 9 11 0.0001 0.0056 17.2 5.4 1 23 406 428 406 428 0.98 10 11 0.01 0.56 10.9 0.6 1 23 434 458 434 458 0.95 11 11 0.0049 0.27 11.9 0.7 1 23 464 486 464 486 0.94
Sequence Information
- Coding Sequence
- ATGTGTAGGACATGTGCCACAAAGTCACCTAATATGAGAAATCTATTCGAGAATGGGGACGGAgatgaaacatttattcataaaatttttgTCTGTACACAAGTTCacatcacaaatgaaatggatcgACCATCAAAAATGTGTGGTGATTGTGAATTTCAACTTGAACAAGCCTACAAATTTCACAATCTCGTAAAAACAAGCGAACAAACCTTCCAAAATATGGTGATATCAAACATCAGAATGGAGATAATCACCGAAGAGAAACCAGATCCATTTGGAATCGTTGACGTGAAAATGGAATCAGACCAAGATGACAGTGTTGTTGAACAACTAACAACAGCGTCAGTTCTGCCAGATTTAGGAGATTCTAATCCTGAAGTTAAAGAGGAGCTAATCACCACCTACCGGCATAGCACTACGGCACGAAATTCTATCAAAGTACCTATCGCAAAAAAgtcaaagaaagaaaaaccaaaaaagaaaactgtgacaaataaaaagcgaaaCAAAGACCAAATCAAAACATATGAATGCTACAAATGTAAAGAGGaatttccatcattttggAAAACGTCAGtacatttaaaacaacattATGCTGAagagaaattcaaatgcattgtttgtggcattcgattcattttatggGATGAGTTTAGTCGGCATTTGTGCCAAGGATCCAGCATCAGTTGTTCGTATTGTGGTGAAACATTCTATGCAACTGTTGCATTGATCAACCATTTAGATCTTTCACATGATGAAAAAACGTTATTCAAGTGTGAAACGTGTGCTCAGTTTTACTCAATGTCACTGCTCAGGCAGtatcacattcaaattcaacatgCGGACGTCGTATCAGAAGAGAGCAAACCATTCGAATGTGCTGTTTGCAAAAAACGATTTGGAACCAAAGTTTCGTTGCGAAATCACGAAGAGATTCACTCTGATAAAAAACcatttttgtgttttgaatgtgGAAAGAGATTTAAAACATCATCAAGTTTACATACACATCGAATTTGTCACACCGAAAAAACTATGAAATGTCCCGACTGCCCAATGACTTTTAATCGAATCGCTGGTTTCCGAAAACATCGAGATGTTCATCTAAATTTGAAGTACAAGTGTAATCAGTGTCATGCAGAACTTAGGTCAAAAGACGCACTGGAACGCCATACACGAAGACACCGTTTAACGGATGATGATAAAAGACACCAATGTACATTTTGTCccatgaaatttttcaaacgagatAAATTAACGCGACACATTAGAACGCACACTGGCGAAAAACcaTTCAAATGTGCATTCTGTTCAGATCGAGCATATGCACAGAAAGGCGACCTCACAAAACATATCAAGCTAAAGCACGTCGGAAATAAAATCTACAATTGTGAGATATGCAAAGAAGGATTCCAATATTACGCAGATTTAAAAACGCATACTTTTGAACATTACAAAGAAGATAAAGCAAAACAAGAAGCTCTTTCTTAA
- Protein Sequence
- MCRTCATKSPNMRNLFENGDGDETFIHKIFVCTQVHITNEMDRPSKMCGDCEFQLEQAYKFHNLVKTSEQTFQNMVISNIRMEIITEEKPDPFGIVDVKMESDQDDSVVEQLTTASVLPDLGDSNPEVKEELITTYRHSTTARNSIKVPIAKKSKKEKPKKKTVTNKKRNKDQIKTYECYKCKEEFPSFWKTSVHLKQHYAEEKFKCIVCGIRFILWDEFSRHLCQGSSISCSYCGETFYATVALINHLDLSHDEKTLFKCETCAQFYSMSLLRQYHIQIQHADVVSEESKPFECAVCKKRFGTKVSLRNHEEIHSDKKPFLCFECGKRFKTSSSLHTHRICHTEKTMKCPDCPMTFNRIAGFRKHRDVHLNLKYKCNQCHAELRSKDALERHTRRHRLTDDDKRHQCTFCPMKFFKRDKLTRHIRTHTGEKPFKCAFCSDRAYAQKGDLTKHIKLKHVGNKIYNCEICKEGFQYYADLKTHTFEHYKEDKAKQEALS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -