Aaph014423.1
Basic Information
- Insect
- Aphidoletes aphidimyza
- Gene Symbol
- ZFP42
- Assembly
- GCA_030463065.1
- Location
- CM059999.1:19064515-19066596[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.002 0.11 13.1 0.1 2 23 19 40 18 40 0.96 2 13 6.1e-05 0.0034 17.9 0.3 2 23 236 257 235 257 0.96 3 13 7.4 4.1e+02 1.9 1.6 3 20 266 283 264 285 0.91 4 13 2.2e-05 0.0012 19.3 1.4 1 23 288 310 288 310 0.98 5 13 7.1e-05 0.0039 17.7 0.5 1 23 368 390 368 390 0.98 6 13 0.27 15 6.4 2.0 2 20 398 416 396 418 0.92 7 13 0.003 0.17 12.5 2.6 1 23 421 444 421 444 0.90 8 13 3.1e-05 0.0017 18.8 0.1 1 23 494 517 494 517 0.97 9 13 0.021 1.2 9.9 2.3 1 23 524 547 524 547 0.96 10 13 0.0002 0.011 16.3 0.4 1 23 553 575 553 575 0.97 11 13 0.0024 0.14 12.8 1.0 1 23 581 605 581 605 0.98 12 13 0.0012 0.065 13.8 0.6 1 23 611 636 611 636 0.93 13 13 7.7e-05 0.0043 17.6 0.1 1 23 643 665 643 665 0.98
Sequence Information
- Coding Sequence
- ATGGAAATTCTCAATTTCTCATCGCAGATAGGCAAAGTTTACAGAAGCAGTGTTTCGTGTGAATTTTGTCCTCGTGTATTTGACACAGTCTCcgataaaaatgcacacattatGATTCATTTTGAGCAACAAATTTGCCATAAATGCGACCAAAATTTGTTGCGAATCGGTGAACATTTGTACGTACTTCATGGCACTATAACATGCAttgatacaaaaataaaacaagagaCATTTACCGATGAACAACATGAAAGTGAAATTCTGTCTCGACTTCATGATCCGGTTGATGCGAATTTCCTGACAGATCCCGAAAATGCTAACCTCAATGATGGACACTtcgaagaaaaacaagaaataaccGAATTTATGGATCCAATAGAGAACAATTCTGAATTACGTTCAACTTGTGTTAGTCCACCAAATGTTGCATCTTCAGAGTGTAGCATCGAtgaaagaaacacacaaaatgatgcGCAAGATGCTTTTTTGGATGAGTCGAATATAAAATTAGAGTTGAATGAAGAAAACGAGTTAGCCGAGAGTGAAGTTGTTACATTCGATACATTGGCTACAAAAGTTCAACAATCCAAATTTGACAGAAGCATTAAAAGGtataaatgtgaattcgaaGGATGTAATGAGATTCTAAGTTTGAATACCAGAAAATTGCATATAGCAAGAAAGCATACTGAAAATAATTTggaatgtgatgtatgtaaaAAAACGTTTCCGACGATATCGCAGATTCGTCAACACATGATTAGTCATGAAGATTCCGGTGAACGATTTGGTTGTGAAAAATGCGGTTCAAAAAATATAACCAAAAGATCATTGGAGCGGCATCACGAACATCCCAATTTTGTGTGCAGTGAATGTGGCATTGCATTTTGTAAGATTTCACAATTGAAAGTGCATTATAAAAGTCATGATGGAGCAAATCCAAACGAAGGTATTGATATTTCGAGTAAATTGACGATCGGTGATGCCATGGCACGGAAGTGTGAGAAAAAGTATAAATGTACGTACGAAGGATGTGATGATCTAGTTAGTACGGCTACCCGACGCTATCACATGGCAACCAAACACAAGACAATCCGTTACGATTGtgatttatgcaaaaaaacgTTCCCAACACTGTTTCAAATACGCGTCCATATGAATGTCCACGGTGCAAAGTGCAAACGATGCACCTGCAATGTGTGCGGAGTTTCGAATATAACAAAAGGAACTTTACAACGGCATCACtacaaacaaaatttcgaATGTTCGCAGTGTGGTATGCGATTCTGTTTGAAAACTCAGCTCAAGGTACACAATAtcttaaaacacaaaacagaCGAAGCGCTCATTAAAAAACGCAACAGAAACAAAGTTAAAAACATTAAGAAATATAAATGCACATTCGAGGGTTGCAACGATCTCGTTAGCTCTAATAGTCGTTCGTATCATATGGCAAGAAAGCACAAAACCACTCAGTTTGAGTGCGATGTTTGTAAAAAAGTGTTTGCAACGAAAGCAATGGTTCAAGTTCACATTTTAAGACTTCATGTGCCATCGGCTAAAAAGTTCAAGTGCAAATTGTGCGGATCTGCTTATTTATCGAAAAGTTTATTGAAATGGCATCATAAGCTGTCACACATCAAAgaacacaattttatgtgcAGTGAATGTGGCGAAACATTTTTGCGAAAGAATCAATTGGCAATACATATTACCAAGCATACTGGTGAAAAGCCGTTTAAATGCACATTCGAAGGCTGCTCAAAAGGATTTCGAACTCAAACTGGACGAGCCGAACACTTACGTTCACACACCGGTGAAAAACCGTATCAATGCTCGATTGATGATTGTGATCGTCGATTTGCTTATGCTATTGACTTTAAGAGACATAAATACAACGCTCATGGAATCTATACTAAGAAATTTCCGTGCCCAATTTGTGCAGAAATATTCCCAGAGAATATGTTACTCAAAAAGCATATGAAAAAACATGAAGTTCAAATGTAA
- Protein Sequence
- MEILNFSSQIGKVYRSSVSCEFCPRVFDTVSDKNAHIMIHFEQQICHKCDQNLLRIGEHLYVLHGTITCIDTKIKQETFTDEQHESEILSRLHDPVDANFLTDPENANLNDGHFEEKQEITEFMDPIENNSELRSTCVSPPNVASSECSIDERNTQNDAQDAFLDESNIKLELNEENELAESEVVTFDTLATKVQQSKFDRSIKRYKCEFEGCNEILSLNTRKLHIARKHTENNLECDVCKKTFPTISQIRQHMISHEDSGERFGCEKCGSKNITKRSLERHHEHPNFVCSECGIAFCKISQLKVHYKSHDGANPNEGIDISSKLTIGDAMARKCEKKYKCTYEGCDDLVSTATRRYHMATKHKTIRYDCDLCKKTFPTLFQIRVHMNVHGAKCKRCTCNVCGVSNITKGTLQRHHYKQNFECSQCGMRFCLKTQLKVHNILKHKTDEALIKKRNRNKVKNIKKYKCTFEGCNDLVSSNSRSYHMARKHKTTQFECDVCKKVFATKAMVQVHILRLHVPSAKKFKCKLCGSAYLSKSLLKWHHKLSHIKEHNFMCSECGETFLRKNQLAIHITKHTGEKPFKCTFEGCSKGFRTQTGRAEHLRSHTGEKPYQCSIDDCDRRFAYAIDFKRHKYNAHGIYTKKFPCPICAEIFPENMLLKKHMKKHEVQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -