Aaph007605.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphidoletes aphidimyza
Gene Symbol
L
Assembly
GCA_030463065.1
Location
CM059997.1:31919437-31936211[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0001 0.0056 17.2 3.5 1 23 193 215 193 215 0.97
2 16 0.63 35 5.2 5.7 1 23 221 243 221 243 0.98
3 16 1.7e-06 9.6e-05 22.8 4.0 1 23 249 271 249 271 0.99
4 16 1.6e-05 0.00089 19.7 0.2 1 23 277 299 277 299 0.99
5 16 0.015 0.84 10.3 0.7 2 23 411 433 410 433 0.96
6 16 0.63 35 5.3 0.1 2 23 578 599 577 599 0.96
7 16 0.00039 0.022 15.3 0.5 1 23 608 630 608 630 0.97
8 16 0.012 0.66 10.7 3.3 1 23 638 662 638 662 0.91
9 16 2.8 1.6e+02 3.2 0.0 2 23 668 690 667 690 0.91
10 16 0.056 3.1 8.6 0.7 1 23 697 720 697 720 0.97
11 16 0.00036 0.02 15.5 2.2 1 23 755 777 755 778 0.96
12 16 0.00082 0.045 14.3 0.5 2 23 975 997 974 997 0.96
13 16 0.033 1.8 9.3 0.1 1 23 1002 1024 1002 1024 0.97
14 16 0.00099 0.055 14.1 0.4 1 23 1152 1174 1152 1174 0.96
15 16 0.018 1 10.1 0.2 1 23 1184 1206 1184 1206 0.97
16 16 0.0045 0.25 12.0 0.4 1 23 1213 1235 1213 1235 0.95

Sequence Information

Coding Sequence
ATGGCTTTAAAAATGCTTTACCGTGGGCCAAGTTCGCGACTTGAAACACTCATTGAGAAAATTCAACAGAATAAAGATAGCAGTCCAGATATTGACTCATCAAATACATCACCAAGCTATTCACCATCACTTCCTGATATGGCTTCAACTCCAAACTTCGAAGTGGATAATATTCTTAGcattaataacaataataaaatcacaGCAAAACAATATCAACCGCTAAACCATTCGGAGCGTTCACCAAGTGTGAATGGTTGCATAAATGAGAACATATTACCCGAATTGAGTGACAAACAAGGACCAGAAGCATCAAcagcagcatcagcatcagcaacCACCCCATCACCAACCATGAAAGATGTAGCATCACAGCGTACCGTATCCGATACAGGGGTTGCCTATTCACCGATCACCAACACTATAAAACCATCATCGCGCACATCAAGCGACACATCAGCGATGATGACAGGCAAAAGTAAAGGGGAAGGCAGCCGTGTTGGTAAATACTGTAAAATTAATGGAACAACATCACAATTACCGTCAAATGCGACTAATAGCAATGTCGAAGGCTCTTATCATTGTCAGTTTTGTGATAAATCATTTCCACGTTTGGGCTATCTGAAAAAGCACGAACAGAGCCATGCGGAGCacatgccattcaaatgtgaatattgCGCACGATTGTTCAAGCACAAGAGGTCACGGGATCGACACACAAAACTACATACGGGCGATCGACGCTACCGTTGTCCACATTGTGAATCTGCATTTTCACGAagCGATCATTTAAAAATCCACATGAAGACCCATGACAATCAAAAACCGTTTCAATGTACGGTTTGTAATCGCGGTTATAATACGGCTGCTGCGCTCACCTCACACATGCAAAGCCACAAAAAGCAGGCAGCACTTCAACGGAATAGTACATTGAACTATAGCCCCCGATCGACTGGTTCGGCTTCGAGTGGTAATAGTTTGTATAAGCGAAAATATTCGCCGCATATTGATCAACGAGATGGCCCAAATCAATCATCACTGCTTGCCGCCAACGCAAAACGTTTTGCATATCACTCAAATAACACATCCATGCTGTACTGCATCTACTGcacgaaaaatgattttgaaaatttggaaCAATTGCACGCCCACGTGCAACAAATGCATGCCATTGTATTGCGTGAGgcTGCAGCAAGTCCATTTTCGGGCATTCATCCGGGTCTTCATTTATCTTGTGAATTTTGTACAATGAAATTCCCATCAATTTCGACCATGTTTCAACACATTCGTTCGATGCATATCGATCGAATCAGTAATCCAAGCAGTTATATGGAACACATAAGCCGACGATCAACAGCTATTGGTGATGCTAATGAAAGCTATCGTCTAAAGTCAAAAGAAGGTTTTGTTCATCCGCTTGAATGCACGAAAACCGATGAAAATCGcgtaaaaaatgaattgagtgtATCAAAAGTAGAGCGTGATACGCCAAACAGAAGTGTGAATGAGCATGAATCGGGTGCCAAACATCTTCAGAATGGTGACATCAAGCAAGATGATTTACCGACTGATTTGAGCCAAAAGAAGATGGAAACAAAGAGTGTTGAAAGCCGTGACGATTCAAATGATATGACACACTCCACAAAGGACAGCCCAATCGATTCGTATGTTAATCGAAAGCGATTACAAAAGTCCGCATCTGATTTTGCCGGCAACAGTCCAGATCCATTGCGATGTAGTCAATGTAGTTTAATTTTACCCAATATCGAAGCATTTCGTGATCATCTTCGTAACCATTTGGTGCGcggtgaattgaaaaattttgtatgtttcCAGTGTGGGCTGACATTctccaatcaaaatgaatacgaaCTACATGTGTCATCCCATTTTTTGATCAGCTCAACCGAATACACATGCTCATTCGGGTGTAATAAACATTTTACGAGTACGGAGACCATGCAAAAGCATTTATTCGATGAGCATGCACAGAATGTTTGGAAATGTGGCATTTGCTATGAGCTATTCGAATCGAAAGTagcaattcaaattcattttgcaatggCACATTCGAATAAGGAGGATACATTTCGGTGTTCAGCTTGCATGGAAGCCTTCGAAACGGAAACGGAATTTAAAAATCATGTACGAACGCGGCATTCGTTAATGTTTTCGTTGCCAAATTTACAGTGTTCGCTGTGCCGAACGGTTTGCTCATCGGAATTGGAGATGCATTTTCATATGGCCACACATTCACGCCAATATCGATGCACCATATGCCCAGAagcatttcatattgaatttttactcGAACGGCATATGCAAACCCATCATTGTCTTCCCGAAAAAGAAACGCTTGGACCGTACAAAATCGATAATCTCAACAATAACATGTTTGACTATAATTATGCGGCCGGAAAAAAGCTATATCCGTTCAGTTCGGCCGCAGCACCCGCCAAACTATTCGATCCGCTGCATATTCAAACATCAAATGCAACATCATCGCTCAAATTACCACCGCCGCTCTATGAACTCTACGATAATATTGGGAAAACGTTTACACAACAAAATCTATCCAagcatttttcaaacatttcgaaaaCATTTTCCGACCATTTGGATCCATCGCAAGCATTTTCCAAACACTTTGAACATTCGGCTGATATTCCGAACTTTTTAAACATGTACAAATCGGACTATgtatcaaaaacatttttgcgaTCAAATCCAATGGGATTTTTACCGCCAACCTCATCGGAATCACATAGCACCGTCACGGAACAGCAACAGTATGGCGACAAGAAAACCACCGCAGACACACAAATTGCATGCAACATTTGTGAAcgcaatgattttcaaaatgaaattgaaatgctcaCGCATCAAAAAATTGTGCACAATATTAAAACTGGCGTTAGTTTAATGTGCGCTTATTGCAACGACAATTTCCGGTCGAGaAACGAATTGgaaaatcatatgaaaactGCTCACACGGGTGGTAAGCATAAGTGCTTGATTTGCGATGAAATATTTGCATCGGCTGATATTTTGGCCGAACACAAATTGACCCATTCGAGAATCGGTGTACGAGGTAAATGCGCTTATTGTTCGGCAAATCTATTGGATGTGCAAAGTTTTAAGGCTCACATGAACGAACATGGAAATGTCGATTTGCCGGTGCAATGCATTTGTTGTCGCCAAACATTGAGctcaacatttgaaattgacttGCATGCCAAGTTCCATGTAAGTTCATCGTCCAGTGATAATATCGAACGAAATTGTGCATTATGTTTGGTTGCACTGCCGCCAAAAACGGATTCAAAAGTCTGTAAAAAATGCTATGAGAAGCACAACAATCACACCAAATACggttcatattcattttcaaaggATTCCGATCACACCACGAAAGAGTCCGCCACCAAATCGATTGCTGACACATTGCCCGAGCATTATTGTAATTTATGTCAAAAgccattttcaatggcaaCCGAACTGGAAGAGCATTTAATCGAACATTCATTTCGTGGATGTGAAGAGCGTGGCTACAATTGTTACATTTGTTCAGCGATATTCACATTACCGGGTGGTTTGCATCAGCATATGATTGAACATGGACCAAATTATCGTCCATACGATTGCAATTTATGTGCGAAAAAATTCTATTTCCGTGCTGAAttggaaaatcatttgattgatcATGAAACGGGTCGAATTGGTACACCAAATCAACCCACACATTCAGACACAAATTCCAATACATCAAATGGTTTAAAAcatgttcaattgaaacatgaacatgaaattgaacacaatcaaatgaaagatTCAAATGATGATTCGGCTAGTGAAAAAGAACGTGATCCGGATTTTAAACCAGAACCACAACAATATTCAAGCGAAGCAAATGCCGAAGAGGATGATGAATACATTGAAGTGGAGCAAATTGGTGAGAGTGCAACAATGAACACGGACGCACATACAGAGGATGATGCACAAAGCCCAGAAAAGAATGATCAATCGGAAAAACCggatgatgattga
Protein Sequence
MALKMLYRGPSSRLETLIEKIQQNKDSSPDIDSSNTSPSYSPSLPDMASTPNFEVDNILSINNNNKITAKQYQPLNHSERSPSVNGCINENILPELSDKQGPEASTAASASATTPSPTMKDVASQRTVSDTGVAYSPITNTIKPSSRTSSDTSAMMTGKSKGEGSRVGKYCKINGTTSQLPSNATNSNVEGSYHCQFCDKSFPRLGYLKKHEQSHAEHMPFKCEYCARLFKHKRSRDRHTKLHTGDRRYRCPHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQSHKKQAALQRNSTLNYSPRSTGSASSGNSLYKRKYSPHIDQRDGPNQSSLLAANAKRFAYHSNNTSMLYCIYCTKNDFENLEQLHAHVQQMHAIVLREAAASPFSGIHPGLHLSCEFCTMKFPSISTMFQHIRSMHIDRISNPSSYMEHISRRSTAIGDANESYRLKSKEGFVHPLECTKTDENRVKNELSVSKVERDTPNRSVNEHESGAKHLQNGDIKQDDLPTDLSQKKMETKSVESRDDSNDMTHSTKDSPIDSYVNRKRLQKSASDFAGNSPDPLRCSQCSLILPNIEAFRDHLRNHLVRGELKNFVCFQCGLTFSNQNEYELHVSSHFLISSTEYTCSFGCNKHFTSTETMQKHLFDEHAQNVWKCGICYELFESKVAIQIHFAMAHSNKEDTFRCSACMEAFETETEFKNHVRTRHSLMFSLPNLQCSLCRTVCSSELEMHFHMATHSRQYRCTICPEAFHIEFLLERHMQTHHCLPEKETLGPYKIDNLNNNMFDYNYAAGKKLYPFSSAAAPAKLFDPLHIQTSNATSSLKLPPPLYELYDNIGKTFTQQNLSKHFSNISKTFSDHLDPSQAFSKHFEHSADIPNFLNMYKSDYVSKTFLRSNPMGFLPPTSSESHSTVTEQQQYGDKKTTADTQIACNICERNDFQNEIEMLTHQKIVHNIKTGVSLMCAYCNDNFRSRNELENHMKTAHTGGKHKCLICDEIFASADILAEHKLTHSRIGVRGKCAYCSANLLDVQSFKAHMNEHGNVDLPVQCICCRQTLSSTFEIDLHAKFHVSSSSSDNIERNCALCLVALPPKTDSKVCKKCYEKHNNHTKYGSYSFSKDSDHTTKESATKSIADTLPEHYCNLCQKPFSMATELEEHLIEHSFRGCEERGYNCYICSAIFTLPGGLHQHMIEHGPNYRPYDCNLCAKKFYFRAELENHLIDHETGRIGTPNQPTHSDTNSNTSNGLKHVQLKHEHEIEHNQMKDSNDDSASEKERDPDFKPEPQQYSSEANAEEDDEYIEVEQIGESATMNTDAHTEDDAQSPEKNDQSEKPDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-