Aaph008584.1
Basic Information
- Insect
- Aphidoletes aphidimyza
- Gene Symbol
- -
- Assembly
- GCA_030463065.1
- Location
- CM059997.1:45890715-45893093[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.29 16 6.3 0.3 2 23 200 222 199 222 0.94 2 12 8e-05 0.0044 17.5 1.5 1 23 255 277 255 277 0.98 3 12 5e-05 0.0028 18.2 0.5 2 23 289 310 288 310 0.96 4 12 0.16 8.8 7.1 2.7 2 23 332 354 331 354 0.94 5 12 3.1e-05 0.0017 18.8 1.9 1 23 387 409 387 409 0.99 6 12 1.7e-05 0.00092 19.7 2.0 1 23 417 440 417 440 0.96 7 12 0.0048 0.27 11.9 2.5 1 23 447 470 447 470 0.90 8 12 5e-06 0.00028 21.3 1.4 2 23 478 499 477 499 0.97 9 12 7.8 4.3e+02 1.8 0.5 2 23 511 532 510 532 0.69 10 12 0.046 2.6 8.8 0.1 2 23 538 560 537 560 0.96 11 12 1.4e-05 0.00078 19.9 0.8 1 23 565 587 565 587 0.94 12 12 7.8e-05 0.0043 17.6 2.0 1 23 593 616 593 616 0.98
Sequence Information
- Coding Sequence
- ATGGATAATAGATCGTGCCGCTTGTGCCTAGTGCCGAGTACCAGTCCATGTCTCGATATATTCAGTGTTATTGGTATCGAAATGAAGATGAGCGAAATCATTAGCGAGCATTTCAAATGCGAtATTACCGAAGGAGATGCGTTGCCAAACTGTGTGTGTCAAACATGTTGGTCAACAACAGATGCTTTTCATGAGTTgtatacaaaatcaaaattggtaCAACAGGAATTTCTCAATCCATTGGTTAAAATTGAGCTTGATCCAATTGATATGTGGCAGGGCAACAAAGAAAGCCATTTCATTGAGGAACCGATACTTGAAGAGGCAAATCTTGAAGTTGGCCCCGTCAAAGTCGAACCGGATTCAGATTCCGATTCCGAAGATGATAATAATCCAGACGATGGAAATAGCAATGAAGAAAGTGCCGATGAAAATAGCTATGACGATAGTATCAATGGGGACAGTAAAAGTGATCCAGAATATAAGAGTTATAATAAAGTgccgaaaacaaaaagagcaaTGAAACGATGGCGATCGGAGCAAAAAGACATCGAATTCCAGAGGCTATTCGCCCagaataaacatttatttgatatgaCATGTGATTTATGCCCAAAATTATTTGAGTCACTAGATGAAAGCCGAAGCCATTATATGAAAGATCACAAAAAATCCAGAAGTTATATTAAGTGCTGTGGACTTAGACTTCAATATCGCTGTCAAGTTATGAACCATTTAAATCGTCATTTGAATCCTGAGAGATTTAAGTGTTTAGAATGTGACAAAATCTATTCATCAGTTCGTGAACTCAACAAGCACAAGCAAAGACATCAAGAGGTTGGGATCCGTAAAGAGAAAGACATACCGTGtgatatttgtaaaaaaatgtttgcttcaAAAGTCAGCTTAGATCGACACAAGCAACGTCATGTCGCAAAGGATGAGTCGGAAGAGGGACAATACGATAAATTCATTGCCGATAACTTTGACATGAGTTGCGACCACTGCGATGTCAAGTTTACCGCATTCCATGATGCTCGTCGTCATTATAAAGAGGTCCATAATGAGGAAAAGGGTTACATTAAGTGCTGCGGTACTAAACTGAAGGAGCAGTGGATTGTCCGGGACCatataaaatcacatttgaatcCAGAGTCATTCAAATGTGAAGtgtgcaataaaaatttcTCCACCCGAATGGTATTGGTTCAGCACAGACGGCGGCATCGGCTGACTATGACCAAATCATTTATATGCGACTATTGTGGCAAATCGTGTCGTGATAAGGATGCTATTAGGCGTCATATATTTACGAATCATGTCAATTCGGAACCAAAATATGAATGCGAAATTTGTCACAAAAAGTTTCAGTTACCGTGTCTGCTAAAGAATCACGTTTATGCGGTGCACAGGGAGAAGAAGCCGAGCGTTACGTGCGAAATCTGTGGAAAATCGTTTTATGTAAAATTCCATCTCGACAAGCATATGCTGTCACATACTGATAAATCTGAGCGCCTAGCGCAACGAAAGCAATGTGAACATTGTGGAGAATGGCTTATGACAAAAAGTGGTATTTATTATCATGAACAGATTCATACGACTGGAATTCAAAAGTGTGAACAATGTCAAATGGAACTACCAAATAAACTTGCCTTGCTAGCGCACATTCGTCAGTATCACAGAGCACACAAGTTCAAATGTAGCTATTGcgaaaaaacattttctacTGCTTCCGTGTTGAGAACACACGAAGAGGGTCATACCAGGCATAATGTTtatcaatgtaaattttgtcCGAGAGTTTTTACCGTTCCGAGCTCAAGGCGTACGCATACAAGAAGAAATCATCAAGAAGAGCTCAAAATGAGCAAAGAAACAAAGATCTAA
- Protein Sequence
- MDNRSCRLCLVPSTSPCLDIFSVIGIEMKMSEIISEHFKCDITEGDALPNCVCQTCWSTTDAFHELYTKSKLVQQEFLNPLVKIELDPIDMWQGNKESHFIEEPILEEANLEVGPVKVEPDSDSDSEDDNNPDDGNSNEESADENSYDDSINGDSKSDPEYKSYNKVPKTKRAMKRWRSEQKDIEFQRLFAQNKHLFDMTCDLCPKLFESLDESRSHYMKDHKKSRSYIKCCGLRLQYRCQVMNHLNRHLNPERFKCLECDKIYSSVRELNKHKQRHQEVGIRKEKDIPCDICKKMFASKVSLDRHKQRHVAKDESEEGQYDKFIADNFDMSCDHCDVKFTAFHDARRHYKEVHNEEKGYIKCCGTKLKEQWIVRDHIKSHLNPESFKCEVCNKNFSTRMVLVQHRRRHRLTMTKSFICDYCGKSCRDKDAIRRHIFTNHVNSEPKYECEICHKKFQLPCLLKNHVYAVHREKKPSVTCEICGKSFYVKFHLDKHMLSHTDKSERLAQRKQCEHCGEWLMTKSGIYYHEQIHTTGIQKCEQCQMELPNKLALLAHIRQYHRAHKFKCSYCEKTFSTASVLRTHEEGHTRHNVYQCKFCPRVFTVPSSRRTHTRRNHQEELKMSKETKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -