Basic Information

Insect: Aphidoletes aphidimyza
Gene Symbol: -
Assembly: GCA_030463065.1
Location: CM059999.1:16257385-16259765[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.027 1.5 9.6 0.1 2 22 176 196 175 198 0.86

2 15 1.8 1e+02 3.8 0.4 2 17 205 220 204 224 0.83

3 15 0.0053 0.29 11.8 2.9 1 22 233 254 233 256 0.87

4 15 0.0069 0.38 11.4 2.4 2 23 269 291 269 291 0.94

5 15 0.067 3.7 8.3 1.6 1 23 299 321 299 321 0.98

6 15 5.3 3e+02 2.3 1.5 2 21 326 344 326 345 0.92

7 15 0.035 1.9 9.2 1.1 3 21 353 371 351 372 0.94

8 15 2.4 1.3e+02 3.4 1.6 1 23 380 402 380 402 0.95

9 15 8.2e-05 0.0045 17.5 0.9 1 19 409 427 409 432 0.94

10 15 1.2e-05 0.00068 20.1 0.5 3 23 440 460 438 460 0.96

11 15 1.2e-06 6.9e-05 23.2 0.9 2 23 466 487 465 487 0.97

12 15 0.0074 0.41 11.3 0.1 1 23 492 514 492 514 0.98

13 15 0.00039 0.022 15.4 1.3 1 23 523 546 523 546 0.96

14 15 0.00059 0.033 14.8 1.0 1 23 552 575 552 575 0.96

15 15 1.9e-05 0.0011 19.5 0.6 1 23 581 603 581 603 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.027	1.5	9.6	0.1	2	22	176	196	175	198	0.86
2	15	1.8	1e+02	3.8	0.4	2	17	205	220	204	224	0.83
3	15	0.0053	0.29	11.8	2.9	1	22	233	254	233	256	0.87
4	15	0.0069	0.38	11.4	2.4	2	23	269	291	269	291	0.94
5	15	0.067	3.7	8.3	1.6	1	23	299	321	299	321	0.98
6	15	5.3	3e+02	2.3	1.5	2	21	326	344	326	345	0.92
7	15	0.035	1.9	9.2	1.1	3	21	353	371	351	372	0.94
8	15	2.4	1.3e+02	3.4	1.6	1	23	380	402	380	402	0.95
9	15	8.2e-05	0.0045	17.5	0.9	1	19	409	427	409	432	0.94
10	15	1.2e-05	0.00068	20.1	0.5	3	23	440	460	438	460	0.96
11	15	1.2e-06	6.9e-05	23.2	0.9	2	23	466	487	465	487	0.97
12	15	0.0074	0.41	11.3	0.1	1	23	492	514	492	514	0.98
13	15	0.00039	0.022	15.4	1.3	1	23	523	546	523	546	0.96
14	15	0.00059	0.033	14.8	1.0	1	23	552	575	552	575	0.96
15	15	1.9e-05	0.0011	19.5	0.6	1	23	581	603	581	603	0.94

Sequence Information

Coding Sequence: ATGCCGCTTTATTGTTACATAAATACGTGTAAATATTTCACCGGTACCAAGACTTCCGACAATGTCAAAGTTTTCCGGCCTGATGCTATACCAACCATTTTTAAACCAAATCCCACGGCTGATGTGTCACATGCAGAAGTTAAAGTTGAACTATCCCCTGATCCACCCTTGTTTAATGGATTTCCTAGAATCCAATCATATTCacgaatcaaaaatgaatcaatacCACAAGAAACACAACGAATTCAACCTACTGAACCACCTGAAGATGGACTAGCTGTCTCATCAAAGATATGCCACGGTTGCCTTAAGGAAaaggttcaaatacaaaaGCTACAAGATGAAATCAATCTATTGAAATCAGCTTACACTGAACGAGgagaaatcatcaaaaatctCAGATCTGAGCTCACCGATATtaagaaaaaatacacaaaattagtaaataaaatatgtccAGTGTGCAGAACAAGTTATGCAGCAAACGATGAACGAAATCATATTTGCAACGGTAACAATGAAATCAGCTGTGATTATTGTGAACGATCGTTTACATCGATATTGGGTCTAGTTGAACATTTGGACGATGATCATACGGAGAAAAGATTCTGTGATTGCGATAAATGTCCACAAATCTTCTCAATGCCAATATTGTTGCAGTTTCACGCAAAATGTCATCCGATTGGCGACAGTCTTTATCTCTGTGAGATTTGTAATGAGAAATGTtacacaaaatatcaattgaacaaacacTTTGATGAATTGCACAAGGAACAAGCAAAGAATGAAGAGTTCAAACCCAATGAATGTGGTTTTTGCGGTAAATGCCTTCCAACCTCTCAAGGATTGAGAATGCATATGATCCACAGACACGATAAACTGCCGTCCAAATCGTTCGAGTGTTTTCTATGCAAATTAAAGCTGAAATCCCTACGTGAGACCCAAGTCCACCTGCGGACGCATGAACGTAAAGAGAAATGCGTGGTATGCAATGAAAAGTGCACTGCGTTGGAGCTCAAGAGTCACATATGCATCGGAATCACGAAACCGATGAACTGCGCTTATTGTCCTCAAACATGTAAGACAATGAAGGATTTACtacaacatttgaaaaattgcaaatgtgaGAAGCTCATCTATAGATGTGACTTTTGTCCGATGCTTTTCATGATGGAAAGTTTAAAAGATATTCACATGAAACACCACGGAGAACTAGCGAGAGCATACTCTTGTGATATTTGTTCCAAGAGCTTCgccaatcgaatttcattgcaaaaacaTAAATGGAGATCACATAACGCGATCCGCAATCATTTGTGCGAGGAGTGTGGCAAAGGTTTCATATCAGCAAGAAATTTGGAACTTCACAAGAGGGTTCATCGAGAAAAAACGATTAAATGCCCCAATTGTGATGCGAAATTTACCAACACATCCAATTTGAAAACACATATGGAGAGacatcaaaatatgaaattcgtTTGTAATATTTGTGGTGCCTTACTGGTAACTTCGCGTGGGTTGAGGGAACACAAAAaaatacacacacgtAACGAGGCCGATCGTAAATTTGCCTGTACGCTATGTCCCCAAAAATTCTTCACATCAGACAGACTGCGAAGTCACATTCGATTAAAACATAATGCTGGAGAGCGTTTTGAATGCGAATTTTGTGGAGACACATACAAATATAATGGTGATTTGACTAAACATAAGCGTCTCATGCATTTGGGTGATGACCTTTATGAATGTCCAACATGTCCAAAGCGTTTTCGATTGCCGTATGAACTTGAGCGCCATAAATTTGAACATTACGTACCATCGGAAAGTGGGCAACAGAAATAG
Protein Sequence: MPLYCYINTCKYFTGTKTSDNVKVFRPDAIPTIFKPNPTADVSHAEVKVELSPDPPLFNGFPRIQSYSRIKNESIPQETQRIQPTEPPEDGLAVSSKICHGCLKEKVQIQKLQDEINLLKSAYTERGEIIKNLRSELTDIKKKYTKLVNKICPVCRTSYAANDERNHICNGNNEISCDYCERSFTSILGLVEHLDDDHTEKRFCDCDKCPQIFSMPILLQFHAKCHPIGDSLYLCEICNEKCYTKYQLNKHFDELHKEQAKNEEFKPNECGFCGKCLPTSQGLRMHMIHRHDKLPSKSFECFLCKLKLKSLRETQVHLRTHERKEKCVVCNEKCTALELKSHICIGITKPMNCAYCPQTCKTMKDLLQHLKNCKCEKLIYRCDFCPMLFMMESLKDIHMKHHGELARAYSCDICSKSFANRISLQKHKWRSHNAIRNHLCEECGKGFISARNLELHKRVHREKTIKCPNCDAKFTNTSNLKTHMERHQNMKFVCNICGALLVTSRGLREHKKIHTRNEADRKFACTLCPQKFFTSDRLRSHIRLKHNAGERFECEFCGDTYKYNGDLTKHKRLMHLGDDLYECPTCPKRFRLPYELERHKFEHYVPSESGQQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -