Basic Information

Insect: Aphidoletes aphidimyza
Gene Symbol: -
Assembly: GCA_030463065.1
Location: CM059999.1:19083044-19085155[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.9 1e+02 3.8 0.8 3 23 41 61 39 61 0.91

2 14 0.0043 0.24 12.1 0.2 1 23 292 314 292 314 0.95

3 14 0.015 0.81 10.4 0.9 1 23 320 343 320 343 0.95

4 14 1.2 67 4.4 5.7 1 23 350 374 350 374 0.82

5 14 3.4 1.9e+02 3.0 6.1 3 23 381 402 379 402 0.94

6 14 0.0019 0.11 13.2 3.3 1 23 429 451 429 451 0.97

7 14 0.0015 0.084 13.5 1.3 3 23 458 478 457 478 0.97

8 14 6.8e-05 0.0038 17.7 2.3 1 23 486 509 486 509 0.96

9 14 5.8e-05 0.0032 17.9 2.9 3 23 520 540 519 540 0.97

10 14 5.6e-05 0.0031 18.0 1.0 1 23 548 570 548 570 0.98

11 14 0.00086 0.048 14.3 3.2 1 23 576 597 576 597 0.98

12 14 4.4e-06 0.00024 21.5 3.8 1 23 603 625 603 625 0.93

13 14 2e-06 0.00011 22.5 2.2 1 23 631 653 631 653 0.98

14 14 0.013 0.71 10.6 1.5 1 23 659 681 659 681 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.9	1e+02	3.8	0.8	3	23	41	61	39	61	0.91
2	14	0.0043	0.24	12.1	0.2	1	23	292	314	292	314	0.95
3	14	0.015	0.81	10.4	0.9	1	23	320	343	320	343	0.95
4	14	1.2	67	4.4	5.7	1	23	350	374	350	374	0.82
5	14	3.4	1.9e+02	3.0	6.1	3	23	381	402	379	402	0.94
6	14	0.0019	0.11	13.2	3.3	1	23	429	451	429	451	0.97
7	14	0.0015	0.084	13.5	1.3	3	23	458	478	457	478	0.97
8	14	6.8e-05	0.0038	17.7	2.3	1	23	486	509	486	509	0.96
9	14	5.8e-05	0.0032	17.9	2.9	3	23	520	540	519	540	0.97
10	14	5.6e-05	0.0031	18.0	1.0	1	23	548	570	548	570	0.98
11	14	0.00086	0.048	14.3	3.2	1	23	576	597	576	597	0.98
12	14	4.4e-06	0.00024	21.5	3.8	1	23	603	625	603	625	0.93
13	14	2e-06	0.00011	22.5	2.2	1	23	631	653	631	653	0.98
14	14	0.013	0.71	10.6	1.5	1	23	659	681	659	681	0.93

Sequence Information

Coding Sequence: atgaatttaatcgaaaatgtttttttaacCGGTGATTGTTTGGAAAATCAATCGTTGCAAAAAACTCGCATTAAAATGGGTGAagtatttcaattgcaaaatgaacGATATGCACTCGTTTGTATTCATTGTTCCGAGgagtttcaatatttttcggAGTTTACATTGCATGTACAAGAGCATTTTGAACGAATGAATCTACCAAAAGAAGAACAATTTCCAGTTGCAGCTGAATTTATTAAAACCGAGATTCATTTGGAAGATGACACACCGAAAATCGTAGAAATTACCGGAGACACTCAAGTAGCCGTTGAAATGGATATAATCGATCCAACGTTAGTTTCCGTATCGGTTTCCGAGTTAAAGAAAGTTAAAAACACGAACACAATTGACAAAACTAATGAGAACTTTAAGGAAAATCTGAAGGTACCTAAAGAGTCTTCAGATGATGACttcaatgattttatgaatgatTGTGAAAATGGCGATTCCGATGTTGATACTGATCATAAAGTGATACAATCTACATCAATAGATACTAaggaaattgttttaaaagaTGTTGAAGAAACAAATCGAACGAGACAAGTGAAAAAGCAACCGAAGAAAAAATCACCGTTGACATCTCGACCAAAGCAACCAAAGCCAGTAAAGCGAATATTGAAACCGAATGAAGTGTcacaaaattatgaaaacCTTCTGCAACGATTCACAAACTCAACAGAGGACCCATTGGATCCagtcaaatttgaaatattcaaagcTGAAAAAGTCGATAGGCTATTTCCCAGCACCATCAAAGACACACCTGAAGTTCGATTGATGGCAACACTTTCGGCGCACACCTACAAATATGAGAAAGTTGGCAGAGACTTTTTGTGCCCAATATGCAGAAATCAATTCCCAAACGCGGCATCTGTTCGACGTCATCTATTTACACACATCAAAGAACCTGTATTTCTTTGTGGTTTTTGTCCGGAAAAATTTCGTGCCATTCGATATCTTCGTaatcatttgaatacaaaGCATAATGATGAGCCACGATCATTCGAATGTTTTCTGTGCCACAAGgaattcacacaaaatcaattccGAACGTTAAGAGAACACATACAAACCCATCTCATCGAAACTATGCACTGTATGCTTTgtaacaaaaaattcaaagagttttgtttttatcaattgcaTATGATGAATCTGCATCCAAATGGTATCcaactgaaaaatgaaactcaAGTCACGCAGCCGATCAGTTATCGTGAAAAGCCAATCATCACAACATTCGAATGTTATTTATGCAAAAAGAATTTCCGAGAACGCCGGTTACTACGAAGTCACACCAAATTGCATATTCAACAGCCGAGACTGTGTTTAGTTTGCGGAATATTCTGTTCTAGTGCAACTTCGCTAAGTCGACACATGAAATTGCATAGCAGcgatgaaacaaaatcacacatcTGTACGATATGCGGCAAAGGATTTAAAATTCGACAGTATTTATTGCGTCATCGTCGAAAAGAGCATCAATTATGGGCCGACAATACGCAACCAATGTGTCAAATCTGTGGCACTTATTTCAATAAGAAGAGTTTACTACATGAACACATGAAAACACATCCATTTGAAGAGACgcgcaattttatttgtaccATTTGTAATCATGCAGCTcgaaatgcatacaatttgaaaCGGCATCTTGAAACACATAGCAGCGATCGTTCGTATGAGTGTCCGATTTGtcacaaaacatttcatcCGCGCTACGCTAAAGATCACATCAAATCACACACCGGATCACGCAAATACAAGTGTCAAGATTGTGGTAAGAAATTTAAGCGAAAGTATGCATTAAAACAGCATAGCTATCAACATGGCGGAGCACCGGAACATAAGTGTGATATATGTGGTCGTGCCTTTGCCAGAACCGATAAACTGTTACGGCATCGACGACGCCATGGCATTCCATTGAATTATCATTGTAAAATTTGCCAAAAAGGTTTTATCTCcgaaaaatcatatttattacACGAATCCGGTCACATGAAATCTCAATCAAATGAACCACAAACATCTGAAGCATCAAATGTCGAATTTATAGAAAATAATTAA
Protein Sequence: MNLIENVFLTGDCLENQSLQKTRIKMGEVFQLQNERYALVCIHCSEEFQYFSEFTLHVQEHFERMNLPKEEQFPVAAEFIKTEIHLEDDTPKIVEITGDTQVAVEMDIIDPTLVSVSVSELKKVKNTNTIDKTNENFKENLKVPKESSDDDFNDFMNDCENGDSDVDTDHKVIQSTSIDTKEIVLKDVEETNRTRQVKKQPKKKSPLTSRPKQPKPVKRILKPNEVSQNYENLLQRFTNSTEDPLDPVKFEIFKAEKVDRLFPSTIKDTPEVRLMATLSAHTYKYEKVGRDFLCPICRNQFPNAASVRRHLFTHIKEPVFLCGFCPEKFRAIRYLRNHLNTKHNDEPRSFECFLCHKEFTQNQFRTLREHIQTHLIETMHCMLCNKKFKEFCFYQLHMMNLHPNGIQLKNETQVTQPISYREKPIITTFECYLCKKNFRERRLLRSHTKLHIQQPRLCLVCGIFCSSATSLSRHMKLHSSDETKSHICTICGKGFKIRQYLLRHRRKEHQLWADNTQPMCQICGTYFNKKSLLHEHMKTHPFEETRNFICTICNHAARNAYNLKRHLETHSSDRSYECPICHKTFHPRYAKDHIKSHTGSRKYKCQDCGKKFKRKYALKQHSYQHGGAPEHKCDICGRAFARTDKLLRHRRRHGIPLNYHCKICQKGFISEKSYLLHESGHMKSQSNEPQTSEASNVEFIENN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -