Aaph014143.1
Basic Information
- Insect
- Aphidoletes aphidimyza
- Gene Symbol
- -
- Assembly
- GCA_030463065.1
- Location
- CM059999.1:16260279-16261873[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0085 0.47 11.1 4.5 1 23 132 154 132 154 0.96 2 11 5.7 3.2e+02 2.2 1.1 2 20 159 176 158 178 0.84 3 11 9.9e-05 0.0055 17.2 1.1 2 23 183 205 182 205 0.96 4 11 0.035 1.9 9.2 0.3 1 20 211 230 211 233 0.92 5 11 0.00032 0.018 15.6 0.7 1 23 240 263 240 263 0.97 6 11 4.1e-06 0.00023 21.6 0.5 1 23 269 291 269 291 0.94 7 11 4.2e-06 0.00023 21.6 0.3 3 23 299 319 298 319 0.97 8 11 0.003 0.17 12.6 0.2 1 23 324 346 324 346 0.98 9 11 0.94 52 4.7 3.1 1 23 352 375 352 375 0.84 10 11 9.5e-08 5.3e-06 26.7 2.6 1 23 381 403 381 403 0.99 11 11 6.6e-05 0.0037 17.8 1.1 1 23 409 431 409 431 0.94
Sequence Information
- Coding Sequence
- ATGAAGTTGAATTCAGCCTACGATTTCTACAGATTGGTTCAAAGTAGTGAGGAAAAGTTTAAGGCGCTAGTTTCATCtcaattgcaaacaaaattggaaGAGACCATCATTGACGATGTGAACGAATCCAAGTACCCATTAAGCATTCAAACTGAATCGCATAATGTCGAGCCATCAGCTGATGAGCTGAGCCAATTAAATATAAAGTCTGAGAATATTTTTGTCGATGAACCAGACGTTGATTTAATTAATGAAGAAAGTGAATCATCAATTACGCTCGAAGATCTGAAGgttgaaattcaaagaaaaagaCGACGCAGCATACCAAGAAAACCAGACGAAAAGCCAACAGAAATTAAAAGGCCATTTAACATCAGCAAATCAATCACGGAATTCGAATGTTACATGTGTAAATTGAGTTTTTCTTCATTACACAAACTAAAGTTGCATTTTAAAGATCATGATGCGACTACAAAGTGTCGAATTTGTGTTATAAAGTTCAACAAATTGGATTATGTTAAACATTTATGCTGGGGAACAGAGATTCAGTGTCAGTATTGTTCGAAATACTTTAATACAACTGTCAGTTTGGTGAAACACATCAATCGGAATcacaaaaatcatcataacTACAAGTGTTACAAATGCGCTAAGGCTTTCCCCATGAAAGCACTGCTCGACATTCACCGGCCAAGTCATAACAAAGAATCGAAGCGATTTACATGCGACATTTGTGGTAACAGATATCGAACAAGATTCCAAATTAGAGAACATATAGAAACCATGCACACGGACAATCGATcATTTCTATGTGCAACTTGTGGAAAAAGTTTTAAAAATCCTACCACTCTTCGGGCGCACGTGAGTCGGCACACACCAACCAAACCGGTAGCCTGTCCAAAATGTCCAAAAcgattttttgataaatatggCCTGAAGAAGCACATTGAAGTTCATAACGAGgctgaatttatttgtgatatttgtgGTGCGGTGATGCGATCGAAGGGATCCTACATGGAACATAAAAGGAGACACAAGAATACTAAGGTATACACCTGCGAAATATGCTCCAAACAGATCAAAACGTCATTGTATAATCTCAAATTGCATCTCTACACGCACACTGGGGAAAAACCGTTTAAATGTACATATTGTGATCGCCGGTACACTCAAAATGCAGATCTAAACAAACACTTAAGGACACACGTTGGACAAAATACCTATAAATGTGACATTTGCGATAAATCTTATCGACTTTTACGTGAACTCCGAAAACATTCGTCCGAACATTATGTTCAAAGTCTGGCAAATAAGGGAAGTGGAAGTTCTTCAAAGGATTTATCTTAA
- Protein Sequence
- MKLNSAYDFYRLVQSSEEKFKALVSSQLQTKLEETIIDDVNESKYPLSIQTESHNVEPSADELSQLNIKSENIFVDEPDVDLINEESESSITLEDLKVEIQRKRRRSIPRKPDEKPTEIKRPFNISKSITEFECYMCKLSFSSLHKLKLHFKDHDATTKCRICVIKFNKLDYVKHLCWGTEIQCQYCSKYFNTTVSLVKHINRNHKNHHNYKCYKCAKAFPMKALLDIHRPSHNKESKRFTCDICGNRYRTRFQIREHIETMHTDNRSFLCATCGKSFKNPTTLRAHVSRHTPTKPVACPKCPKRFFDKYGLKKHIEVHNEAEFICDICGAVMRSKGSYMEHKRRHKNTKVYTCEICSKQIKTSLYNLKLHLYTHTGEKPFKCTYCDRRYTQNADLNKHLRTHVGQNTYKCDICDKSYRLLRELRKHSSEHYVQSLANKGSGSSSKDLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -