Aaph014141.1
Basic Information
- Insect
- Aphidoletes aphidimyza
- Gene Symbol
- znf423
- Assembly
- GCA_030463065.1
- Location
- CM059999.1:16253697-16256215[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0025 0.14 12.8 0.1 2 23 165 187 164 187 0.90 2 12 0.0015 0.082 13.5 0.5 1 23 193 215 193 215 0.97 3 12 0.00047 0.026 15.1 4.1 1 23 222 245 222 245 0.93 4 12 2.4e-06 0.00013 22.3 0.3 1 23 257 280 257 280 0.95 5 12 0.086 4.8 8.0 0.3 3 20 342 359 340 361 0.92 6 12 9.1e-07 5e-05 23.6 1.6 1 23 399 421 399 421 0.98 7 12 0.0002 0.011 16.3 1.8 3 23 429 449 427 449 0.95 8 12 3.3e-05 0.0018 18.7 2.3 2 23 455 476 454 476 0.97 9 12 0.0018 0.1 13.3 0.1 1 23 481 503 481 503 0.98 10 12 0.00038 0.021 15.4 1.3 1 23 512 535 512 535 0.96 11 12 0.00058 0.032 14.8 1.0 1 23 541 564 541 564 0.96 12 12 3.8e-05 0.0021 18.5 1.4 1 23 570 592 570 592 0.94
Sequence Information
- Coding Sequence
- ATGCCACGATATTGTAGCATTAATCCGTGTAAATATTTCACCGGTGCCAAGACATCCGACAATGTCACCATTTACCACTCAAGGGAAAATGTTGATTCGAGTGGACCACAAAGGATTGAACCAACGAAATTGCAACGAGTGAAGCTAATCAAAATAGTCAAGACACAACCGAAGCCACAAACACCGTCACAAACACAGTCACAATCAAAACTTTGCATCCAATGTATTCAACTGGATattaaaaagcaaacacaGCAGAGGAAAATCACAAGATTGGAAGAAACAAGCATAAAACTCAAAACTGAACTCAAAAACTTGAAAAGACGATTGGAAAGATTGAGTCGTCAAAATAAACTGCAACCGAAGGCAGCTGCTCTCAAAGACAgtcaaaatcacaaaaataaatcatcaataatgaaATGCGGACTGTGCCATGAAAAGATGATGGAAAAGGACATACGAAGTCATATATGCAATGGTGACAAAGACATCAGCTGTGATTACTGTGAACGATCGTTTACATCGATATTGGATCTAGTTAAGCATTTGGACGATGATCATACGGAGAAAACATTCTATGAATGCAACAAATGTCCACGAGTCTTCTCGATGTCAATACTGTTGCAGTTTCACGCTAAAACGCATCCAATTGACGAGATTCTTTATTTCTGTAagatttgcaatgaaaaatgttacacaaaatatcaattgaaaaaacacattgatgAATTGCACTTGGAACAACCAAAGAGTGAAGAGCTCAAACCCTTTGAATGTGGTATTTGCGGTAAATGTTTTGCAACTGCACAAGGCCTGAGAATTCATATGACCAACATACACGATAAGCTGTCGTCCAAATCGTTCGAGTGTTTTCTATGCAAATCAAAGCTAAAATCGTTACATGAAACTCGATTCCATCTGCGGACGCATGAACGTAAAGAGAAATGTGTGGTATGCAATGAAAAGTGCACTGCGTTGGAGCTCGACAGTCACATGTGCATCGGGTTTGCGAAATCGATGAACTGCGTTTACTGTCCTCAAACATGTAACACGATGAAGGATTTACTACAACATCTGGAAGTTTGCAAAAGTGAGAAGCTCATATATGGATGTGATTTTTGTCCGACGTTTTTCATGATGGAAAGATTGAAGGATATTCACATGAAACACCATGAAGATCCAATAGAAAAACGATACTCTTGTGATATTTGTTCCAAGAGCTTCGCCAATCAAAGTACATTGCTAACACATAAAAGGAGACATGAATTGACGCGCGATCATTTATGCGAGGAATGTGGAAAAAGTTGCATATCGGCAAGAAATTTGGAACTTCACAAGATGATTCATAgagaaaaatcgattaaatgtCCCCATTGTGATGCAAAATTCACCACATCAATGAGACTGAAAAATCATATGGAGAGacatcaaaatgtaaaattcgtTTGTAATATTTGTGGTGCCTTACTGGCAACTTCGCGTGGGTTGAGGAAACACAAAAaaatacacacacgtAACGAGGCCGATCGTAAATTTGCCTGTACGCTATGTCCACAAAAATTCTTCACATCAGACAGACTGCGAAGTCACATTCGATTAAAACATAATGCTGGCGAGCGTTTTGAATGCGAATTTTGTGGAGACACATACAAATATAATGGTGATTTGACTAAACATAAGCGTCTCATGCATTTGGGTGATGACCTTTATGAATGTCCAACATGTCCAAAGCGTTTTCGATTGCCGCATGAACTTGAGCGGCATAAATTTGAACATTACGTACCATCGGAAGGTGGACAACAGAAATAG
- Protein Sequence
- MPRYCSINPCKYFTGAKTSDNVTIYHSRENVDSSGPQRIEPTKLQRVKLIKIVKTQPKPQTPSQTQSQSKLCIQCIQLDIKKQTQQRKITRLEETSIKLKTELKNLKRRLERLSRQNKLQPKAAALKDSQNHKNKSSIMKCGLCHEKMMEKDIRSHICNGDKDISCDYCERSFTSILDLVKHLDDDHTEKTFYECNKCPRVFSMSILLQFHAKTHPIDEILYFCKICNEKCYTKYQLKKHIDELHLEQPKSEELKPFECGICGKCFATAQGLRIHMTNIHDKLSSKSFECFLCKSKLKSLHETRFHLRTHERKEKCVVCNEKCTALELDSHMCIGFAKSMNCVYCPQTCNTMKDLLQHLEVCKSEKLIYGCDFCPTFFMMERLKDIHMKHHEDPIEKRYSCDICSKSFANQSTLLTHKRRHELTRDHLCEECGKSCISARNLELHKMIHREKSIKCPHCDAKFTTSMRLKNHMERHQNVKFVCNICGALLATSRGLRKHKKIHTRNEADRKFACTLCPQKFFTSDRLRSHIRLKHNAGERFECEFCGDTYKYNGDLTKHKRLMHLGDDLYECPTCPKRFRLPHELERHKFEHYVPSEGGQQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -