Basic Information

Insect: Aphidoletes aphidimyza
Gene Symbol: -
Assembly: GCA_030463065.1
Location: CM059999.1:5955123-5956849[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0004 0.022 15.3 5.3 1 23 188 210 188 210 0.97

2 11 0.0013 0.073 13.7 3.3 1 23 217 239 217 239 0.98

3 11 5.9e-05 0.0033 17.9 1.2 1 23 244 267 244 267 0.94

4 11 0.014 0.78 10.5 0.5 1 23 274 296 274 296 0.93

5 11 0.0092 0.51 11.0 0.4 1 23 302 325 302 325 0.95

6 11 0.0001 0.0057 17.2 2.0 3 23 330 350 328 350 0.95

7 11 0.025 1.4 9.7 0.2 3 23 358 378 356 378 0.97

8 11 1.7e-05 0.00097 19.6 2.2 1 23 384 406 384 406 0.97

9 11 1.8e-05 0.001 19.6 5.8 1 23 412 434 412 434 0.99

10 11 4.1e-08 2.3e-06 27.9 1.6 1 23 440 462 440 462 0.98

11 11 0.045 2.5 8.9 2.9 5 23 471 489 468 489 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0004	0.022	15.3	5.3	1	23	188	210	188	210	0.97
2	11	0.0013	0.073	13.7	3.3	1	23	217	239	217	239	0.98
3	11	5.9e-05	0.0033	17.9	1.2	1	23	244	267	244	267	0.94
4	11	0.014	0.78	10.5	0.5	1	23	274	296	274	296	0.93
5	11	0.0092	0.51	11.0	0.4	1	23	302	325	302	325	0.95
6	11	0.0001	0.0057	17.2	2.0	3	23	330	350	328	350	0.95
7	11	0.025	1.4	9.7	0.2	3	23	358	378	356	378	0.97
8	11	1.7e-05	0.00097	19.6	2.2	1	23	384	406	384	406	0.97
9	11	1.8e-05	0.001	19.6	5.8	1	23	412	434	412	434	0.99
10	11	4.1e-08	2.3e-06	27.9	1.6	1	23	440	462	440	462	0.98
11	11	0.045	2.5	8.9	2.9	5	23	471	489	468	489	0.95

Sequence Information

Coding Sequence: ATGGATACAACTGACGATTGTCCAGTGGATGTTTGCCGAATTTGTACTCGGCTGTCGAATGAAGtactgaatttatttgaagtaGACTACGATGGAATGGTTTTAGCCGGAATATTGGAACACTGTTTGAAACGACCGATTAGCAATGCAGATGGACTTCCAAAAACGATTTGCATAAATTGCCAGGCGAATTTAATAACAACCTATGATTTTCATAGCCTTTGTGAATCCAGTGAACAATATCTCTTGAAGGAATTAGCTGCGAAAGCATTTCCACAAAGTGATGGAACAAACGTACatcaaattgatgatgatacggcacaaataaaatgtgagaTTGATTACAAATTTTCCGTAGCTAATGTTGACGATGACACTAATTTTGGTTATAAAACTGAACCGACACTGGCATCGGAATTAGTTTGTGTAGAAgaaaatttcgatgaaaatagTATAATTGAGGAAAATCCACAGCCATCGCAACGAGTTAGCTGGTTGAGAAGCCGAAGTGCAGTGTCATCAGCACAGCGAAAAAGTCGTCAACAATGCGAAGACAAAGTGTTTGAATGTTATGAATGTAAGAAACACTTTGACCATTTGCGTGAACTGCGAACTCACATGAACGACCATGACAGCAGtcgaaaaccatttgaatgtaCAATATGCAATATGCGATTTGTTCACTTGAATAGCTGGTTTCGACATCGAtccagacacacaaaaaatattcacgaTTGTGAATACTGTGATCAGGCATTCAATACGCTGACTACACTCAAGCAACACATTCAGGAGATGCATAAAGATAAACTCAATGCCTATAAATGCTCTCAATGCACGGAGAAGTTTGCGTTACGCTTCCTGTTGATTTGGCACAACGAGTGGCATAAAAAGGCAAAACAATTTGTATGCAGCGCTTGTGATGCCGTGTTTTTCAATGAACGCAAACTGAAGGCGCACTTTCGAGATAATCACGCGaGCCATTTGTGTGCTGAATGtggaaaatcatttaaaaccATTCATTTGCTGGCTAGTCATCAAATGTTACATACATCAGAGAGGCCATTTGGTTGCGATTTATGTCCTAGTCGATTTAAGTGGAAAGCAGCACTTAAAACTCATATGCTAGTTCATACTGgtcaaaaacaacacatttgtgATATTTGCGGTTCATCATTCACGACAAAGGGTTCAATGAAAAAACATAAGAgAATACATACTGGAGATCGACGTTATCAGTGCGAAACCTgttcgatgaaattttattcgaatgatCATTTGAAACGGCACAAACGCACGCATACTGGAGAAAGGCCATATTCGTGCTCGTACTGTCCgcgttcattttcacaaagCAACGATTTGACAAAGCATATACGGTCTCATGTTGGTCCAAACATGTATCGATGCCATTGTGGTGTTTCCTTTCGGCTTCAAACAGAACTTCGAAAACATTCATACACGCACTACAACAAAGATGAAACAACCACTATGAATGCGGAACAGACGCAATAA
Protein Sequence: MDTTDDCPVDVCRICTRLSNEVLNLFEVDYDGMVLAGILEHCLKRPISNADGLPKTICINCQANLITTYDFHSLCESSEQYLLKELAAKAFPQSDGTNVHQIDDDTAQIKCEIDYKFSVANVDDDTNFGYKTEPTLASELVCVEENFDENSIIEENPQPSQRVSWLRSRSAVSSAQRKSRQQCEDKVFECYECKKHFDHLRELRTHMNDHDSSRKPFECTICNMRFVHLNSWFRHRSRHTKNIHDCEYCDQAFNTLTTLKQHIQEMHKDKLNAYKCSQCTEKFALRFLLIWHNEWHKKAKQFVCSACDAVFFNERKLKAHFRDNHASHLCAECGKSFKTIHLLASHQMLHTSERPFGCDLCPSRFKWKAALKTHMLVHTGQKQHICDICGSSFTTKGSMKKHKRIHTGDRRYQCETCSMKFYSNDHLKRHKRTHTGERPYSCSYCPRSFSQSNDLTKHIRSHVGPNMYRCHCGVSFRLQTELRKHSYTHYNKDETTTMNAEQTQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -