Aaph007620.1
Basic Information
- Insect
- Aphidoletes aphidimyza
- Gene Symbol
- -
- Assembly
- GCA_030463065.1
- Location
- CM059997.1:32492029-32495659[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 6.3 3.5e+02 2.1 0.7 1 9 47 55 47 64 0.79 2 15 0.55 30 5.5 0.2 1 23 201 223 201 223 0.97 3 15 0.018 1 10.1 2.9 1 23 226 249 226 249 0.92 4 15 0.00064 0.035 14.7 1.6 1 23 343 365 343 365 0.98 5 15 0.0018 0.099 13.3 0.2 1 23 374 397 374 397 0.96 6 15 0.026 1.4 9.6 0.5 2 23 421 443 420 443 0.96 7 15 5.4 3e+02 2.3 0.4 6 23 452 469 452 469 0.94 8 15 0.00028 0.016 15.8 2.8 2 23 476 497 475 497 0.97 9 15 1.3e-06 7.2e-05 23.1 2.5 1 23 505 527 505 527 0.99 10 15 9.2e-05 0.0051 17.3 0.5 3 23 537 558 535 558 0.92 11 15 0.0011 0.059 14.0 0.4 3 23 568 589 567 589 0.97 12 15 0.00095 0.053 14.1 0.7 3 23 607 628 605 628 0.94 13 15 0.0036 0.2 12.3 0.2 2 23 634 656 633 656 0.97 14 15 8.3e-06 0.00046 20.6 0.7 1 23 661 683 661 683 0.99 15 15 0.024 1.3 9.7 0.4 1 23 689 712 689 712 0.97
Sequence Information
- Coding Sequence
- atggagaTATGCCGATTGTGTCTTTCAAGTCACAATCAGcatattgacattttcagtGATATTGAGCCGGATAAAAATGTGGCTATCATTATCAGCAAGCATGTTGGTGAAGTGAGCGAATCGGATCCATTGCCAAAGTACGTGTGCCATGGTTGTTGGAAACagatttacaattttcatgaatttcatacaaatgtgCACACAGCACAATCCAACTACTTGAAAGCACTCATCAAATCGGAGCgagaaaataattttgttacGGTATTAGAACcagttcatttgaatgtaGACATTCTACCGGAATCAATTGATGAGCTACATGACCTGAATGGACTACAAAATGAGActgatattaaaattgaagatGATGTTGTTAAAAATGCACCACTCTCACCAACACTGATTTCGTGTGAACTAACCGAAACATTGAATGATATTGATAATGAACCACCGAACGATGACAATGCACTCGAAGAAGACACTTTAGAATTTAATTCGACAGAACATACGGATGATGAACATGATTCAGGTTCAGATGATGAATCAAGCGAAAAAATCAGCACAActgatacaaaaaaatcgaaatatgaatataaattcATCTGTGATTTTTGCCAAGCCATCATTTCGTCTAAACAACGGCTTCTCGATCATTTGCTAAGACATGTTCAATACAAGTGCAAAATTTGCTCGGAAAAATGCTTCACACGAAAAGCTCTGGAAACCCATAATAAAGCAGTACATAGTAAAGaTGCTGTTCAAATAGCGAGGAAGCAGCTCGATGAACTAGAGCCAATTCTATCGCTGATTCCGAcagaaattcaaatcaatcaaattttaacaaaacatgcggaaaatgtttgtgattATTGTAAAGACACATTCCCACCGTCACTAGAAGAGgccaaaattcattttaatcagATGCATGACATGGATGGCTACATCAAATGTTGTGAAATTTCACTAAAAACAAACGATGAAATCAATGGACATGTTTTAACTCATTTATATCCGGAGCATTTTAAATGTCTTGTATGCGGCAAAATTGGAAAGAGATTGGATAAATTTCGTAAACATCTTTCGAAACATTTGgatgacataaaaaaataccCACACGTGTGTTTGATGTGTGAAAAAGGATATGCAAGAGACGATCTGTTAGAAGTGCATATGAAATATGTACATGATATTTATGataaaacaaataaaacagaagAGCCAAATGTGCGCACTTTAGGTGAATTCTTTACGATGCGTTGTGATTTATGtgaatggaaattttcatcatttcaagaGGCAAAAGTGCATTACAAGAGTGAACATGGTGTAACTGGTTATTTGAAGTgttgcaataaaaaatttgTCAAAGCTAAATCCGTTGACAATCACTTTCAGTGGCACGTCAATCCGGAATTGAATAAATGCGAATTCTGTGGAAAATGCTTCAAACAAGCAGTCACCTTTGCCACACATGTTTCAAAACATAAAGCGCTAAAAGAGAGACGATTCCAATGTCCACAGTGtaaaaaagcatttttctCAAACTATTATCTCAAATCACATATGAAAGTGCACGATTTAACTATAAAAAAATCACTCGCATGTTCGCAATGCGACAAACGGTATACCACATCCAAATCTCTTGAAAGCCATATTCTATTTGTTCATAATAAAGAGCCGAAAACCGgtgaaatgtgtgaattttgtggaAGACAATTTATTTCACGTACCAGCGTTCTCAATCATATTCAAACAGTGCATCGATCTGAAGCTGGTTCGAATAGTAAGaatAAAGCCTTTGTACGGTCAAATTGTACAATGTGCAGTGCATCATTCATCAATAAATACCGATTGAAAAAGCATATTGATTCTGTACATCTGGGAAAACCGGTGAAATGTCCACAGTGCGATAAAGTTGCACCAAATGAATCTGCATTGaCTTGTCATATAAGAAGTGTTCATGTTGCTCAAAGTTTCCAATGCCATTTATGCCCGAAAACATTCAAAGCGAATGTTGCACTGAAGGATCACATTGCGACGCATACGGGTGccaaaatgtataaatgtaATTTCTGTCCAGAGGCGTTTATTTGGCGACCGAACATGTATTCCCATCAGAAGAAGGCACATCCAGAAGAATGGAAAGTTCTGAAAAGCAAAGACCGaaaaagagcaaacaaaacttaa
- Protein Sequence
- MEICRLCLSSHNQHIDIFSDIEPDKNVAIIISKHVGEVSESDPLPKYVCHGCWKQIYNFHEFHTNVHTAQSNYLKALIKSERENNFVTVLEPVHLNVDILPESIDELHDLNGLQNETDIKIEDDVVKNAPLSPTLISCELTETLNDIDNEPPNDDNALEEDTLEFNSTEHTDDEHDSGSDDESSEKISTTDTKKSKYEYKFICDFCQAIISSKQRLLDHLLRHVQYKCKICSEKCFTRKALETHNKAVHSKDAVQIARKQLDELEPILSLIPTEIQINQILTKHAENVCDYCKDTFPPSLEEAKIHFNQMHDMDGYIKCCEISLKTNDEINGHVLTHLYPEHFKCLVCGKIGKRLDKFRKHLSKHLDDIKKYPHVCLMCEKGYARDDLLEVHMKYVHDIYDKTNKTEEPNVRTLGEFFTMRCDLCEWKFSSFQEAKVHYKSEHGVTGYLKCCNKKFVKAKSVDNHFQWHVNPELNKCEFCGKCFKQAVTFATHVSKHKALKERRFQCPQCKKAFFSNYYLKSHMKVHDLTIKKSLACSQCDKRYTTSKSLESHILFVHNKEPKTGEMCEFCGRQFISRTSVLNHIQTVHRSEAGSNSKNKAFVRSNCTMCSASFINKYRLKKHIDSVHLGKPVKCPQCDKVAPNESALTCHIRSVHVAQSFQCHLCPKTFKANVALKDHIATHTGAKMYKCNFCPEAFIWRPNMYSHQKKAHPEEWKVLKSKDRKRANKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -