Basic Information

Insect: Aphidoletes aphidimyza
Gene Symbol: RpS16
Assembly: GCA_030463065.1
Location: CM059997.1:3876982-3881896[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.2 11 6.8 0.3 1 12 108 119 108 128 0.88

2 10 3.2e-05 0.0018 18.8 1.3 1 23 288 310 288 310 0.97

3 10 2 1.1e+02 3.7 0.8 1 13 341 352 341 362 0.72

4 10 8.4e-05 0.0047 17.5 0.1 1 23 368 390 368 390 0.97

5 10 0.0014 0.075 13.7 0.8 3 23 411 431 409 431 0.97

6 10 1.2e-06 6.4e-05 23.3 4.7 1 23 437 459 437 459 0.99

7 10 9.1e-05 0.005 17.3 2.3 1 23 465 487 465 487 0.98

8 10 1.8e-06 9.9e-05 22.7 1.3 1 23 493 515 493 515 0.98

9 10 0.00013 0.0071 16.9 0.2 1 23 519 541 519 541 0.98

10 10 0.00023 0.013 16.1 0.4 1 23 550 573 550 573 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.2	11	6.8	0.3	1	12	108	119	108	128	0.88
2	10	3.2e-05	0.0018	18.8	1.3	1	23	288	310	288	310	0.97
3	10	2	1.1e+02	3.7	0.8	1	13	341	352	341	362	0.72
4	10	8.4e-05	0.0047	17.5	0.1	1	23	368	390	368	390	0.97
5	10	0.0014	0.075	13.7	0.8	3	23	411	431	409	431	0.97
6	10	1.2e-06	6.4e-05	23.3	4.7	1	23	437	459	437	459	0.99
7	10	9.1e-05	0.005	17.3	2.3	1	23	465	487	465	487	0.98
8	10	1.8e-06	9.9e-05	22.7	1.3	1	23	493	515	493	515	0.98
9	10	0.00013	0.0071	16.9	0.2	1	23	519	541	519	541	0.98
10	10	0.00023	0.013	16.1	0.4	1	23	550	573	550	573	0.95

Sequence Information

Coding Sequence: ATGTCAGCGAGACAGCGATATGTGAAAATAGTATCGAAAAATAGTCCAAATGATGTAACAATAGATGATGGTGAACAAACGGCATCCGGTCATCATGAGTATATTACAGCCGTTGAGGAATCAACGGATGATGATGGTTCGATAACATACATTGAAGACTacgaaaacaatgaaaatggtgatgaAGACGGGGCATTTTTTGTAGAATATGTCACCGAAGAAGATGAACATTTAATAACGGCTGACGGCAGTAATGATGCTGAATTTGATGGAAATCAATTGACGGAATATGCTGACACCGATGAAAACACCGATGAATTGTACAATTGCAATATATGTGgcatgaattttaaatcgatcactgaacacattgaaaaatatcatagCGGGCAAGATGTGTTAATTGATATTTCGGATGAAGGTGGTGGTGCAACgataaaatccgaaaaaaCACTCGAACTCGTCGATTATACGGACACAAATGAGGATGATGATGGTGGCGGCGGCAATTTGATAGCCGGAACAGACAACATTAGTATGCAGGATGGTGAGTTTATTGTTTATGGTGAAGAATCACCGGAAAATGAGACGGAACTGATGGACGAAGCAACCGATGAAGATGATCAATCCGAAATTTATACATATGATGGTACAACCGGATCACTAACTCGAGCAACAAGTGTCAAAGTAGATAAAAATACCATTAAAACCATTgctaacaaaacaaatCGCGTCACAGGAGTCTACAATAAAGAAAATTCGACGATAGTTAAGAAACCACTGAAACGGCTAGTAAGAACGAATCGAACTAAAGAAACAGATCCACTGGAGATAGATTCAGTTCTAATTGGAACCACAGATCATGTGTGTGAGATTTGTAATACGTCGTTTTATTCAGCAAAGAGTCTCAAATTACACGCTCGAATGCATTTACCCGTCAAATCCAAAACCATCGACGAAGCAACCGAAAATGAAGGCGATGCTTCAAATACCGGCGAACAAGAGCCACCGCGTGAAAAATTCTATTGTGCCATCTGTGGTAAATATTATGATAAAACATTCGAACAAGTGCACGTGCAAATGCACAACGGCGAAGAGAAATTCAACTGTAGCATTTGTAATAAAGTATTTCCGAATGAGGAGAGCATCAATATGCACATGAATGCACATCAAGATACCCGCGTTATTCGAACCAAAGCTGAAATGAGTAATATTAAATTGCCGTATGGATGTCAATTTTGTGGGAAAGAATTTGCCAGACCACATGAGAAAGTCAAACACGAACGTGTACACACGGGCGAAAAACCGTACGAGTGTGAATTGTGTGGAAAATGCTTTAGAGTGTCATATTGTCTAACAATTCATATGCGAACACATACCGATGCGAGGCCATACGTTTGTCCACAATGTAATAAAAGGTTCAAAGCGCAATCAGTATACAATCATCATTTGTTGACACACTCCGATGAACGAAACTACAAATGTCCATATTGTccgaaaacatttaaaacatccGTTCAATTGTCCGGACATAAAAATAGTCACACCAAACCATTTACATGTACTGAATGTAATCGTCCATTTGGTTCATTGTATGCGGTTCGAGCGCATATGGAAAGTCACAAACGTccaaatcacaatttaaagcatatttgtgaaatttgtgGTGCTAAATATGCACGACGTTTTGCACTCAACGATCACATGAAAGAACAGCATAAAGACGTTCAATTAGTACAAATTGTTGATTCGGGTAATACTACTAAGAAGCCACAATCCAGACGGGCGAAGAAGGCAAAAGTCGAAGTCCTGGAAGATGATGAACGAGAATTAGAAGTAGCCGGCCAATCAATTTTACCAAATATGGTCGAACAAGAGCGACGAGAACCACTTCAAGCCGTTCAGGTTTTCGGCAAAAAGAAAACCGCTACTGCTGTTGCCCATTGCAAACGTGGACATGGTTTGATCCGTGTTAATGGTCGCCCATTGGACAACATTGAACCAAAAGTTCTTCAGGCAAAACTCCAGGAACCAGTTCTTTTGTTGGGCAAAGAAAAATTCGCCGGTGTTGATATTCGTGTTCGTGTAAGCGGTGGTGGTCATGTATCACAAATCTACGCTATTCGTCAAGCCATCTCAAAGGCCCTAGTTGCATACTATCAAAAATATGTTGATGAAGCCTCAAAGAAGGAATTGAAGGACATTCTCATCCAATACGATCGAACATTGTTGGTTGGTGATCCACGTCGTTGTGAACCAAAGAAATTCGGCGGTCCAGGCGCTCGTGCTCGCTACCAAAAATCATACCgttaa
Protein Sequence: MSARQRYVKIVSKNSPNDVTIDDGEQTASGHHEYITAVEESTDDDGSITYIEDYENNENGDEDGAFFVEYVTEEDEHLITADGSNDAEFDGNQLTEYADTDENTDELYNCNICGMNFKSITEHIEKYHSGQDVLIDISDEGGGATIKSEKTLELVDYTDTNEDDDGGGGNLIAGTDNISMQDGEFIVYGEESPENETELMDEATDEDDQSEIYTYDGTTGSLTRATSVKVDKNTIKTIANKTNRVTGVYNKENSTIVKKPLKRLVRTNRTKETDPLEIDSVLIGTTDHVCEICNTSFYSAKSLKLHARMHLPVKSKTIDEATENEGDASNTGEQEPPREKFYCAICGKYYDKTFEQVHVQMHNGEEKFNCSICNKVFPNEESINMHMNAHQDTRVIRTKAEMSNIKLPYGCQFCGKEFARPHEKVKHERVHTGEKPYECELCGKCFRVSYCLTIHMRTHTDARPYVCPQCNKRFKAQSVYNHHLLTHSDERNYKCPYCPKTFKTSVQLSGHKNSHTKPFTCTECNRPFGSLYAVRAHMESHKRPNHNLKHICEICGAKYARRFALNDHMKEQHKDVQLVQIVDSGNTTKKPQSRRAKKAKVEVLEDDERELEVAGQSILPNMVEQERREPLQAVQVFGKKKTATAVAHCKRGHGLIRVNGRPLDNIEPKVLQAKLQEPVLLLGKEKFAGVDIRVRVSGGGHVSQIYAIRQAISKALVAYYQKYVDEASKKELKDILIQYDRTLLVGDPRRCEPKKFGGPGARARYQKSYR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -